Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.5040.1 and Xcc-8004.5041.1 overlap by 4 nucleotidesXcc-8004.5041.1 and Xcc-8004.5042.1 overlap by 41 nucleotidesXcc-8004.5042.1 and Xcc-8004.5043.1 are separated by 346 nucleotidesXcc-8004.5043.1 and Xcc-8004.5044.1 are separated by 65 nucleotides Xcc-8004.5040.1: Xcc-8004.5040.1 - Transcriptional regulator, at 4,781,589 to 4,781,789 Xcc-8004.5040.1 Xcc-8004.5041.1: Xcc-8004.5041.1 - FIG01211213: hypothetical protein, at 4,781,786 to 4,782,373 Xcc-8004.5041.1 Xcc-8004.5042.1: Xcc-8004.5042.1 - hypothetical protein, at 4,782,333 to 4,782,518 Xcc-8004.5042.1 Xcc-8004.5043.1: Xcc-8004.5043.1 - FIG01209879: hypothetical protein, at 4,782,865 to 4,783,137 Xcc-8004.5043.1 Xcc-8004.5044.1: Xcc-8004.5044.1 - Cobalt-zinc-cadmium resistance protein CzcD, at 4,783,203 to 4,784,204 Xcc-8004.5044.1
Group Condition Xcc-8004.5040.1 Xcc-8004.5041.1 Xcc-8004.5042.1 Xcc-8004.5043.1 Xcc-8004.5044.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. -0.1 N.D. N.D. -0.9
in planta xylem Xylemvessel barcodes T0L1P4 N.D. -0.2 N.D. N.D. -0.6
moka MOKA N.D. -0.4 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.1 N.D. N.D. -0.5
carbon source Citric Acid 16.67 mM (C) N.D. -0.5 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 N.D. N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 N.D. N.D. -0.7
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.3 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 N.D. N.D. -0.3
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. +0.3 N.D. N.D. -0.2
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -0.3 N.D. N.D. +0.5
carbon source Citric Acid 10mM (C) N.D. +0.6 N.D. N.D. -0.2
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.5 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 N.D. N.D. +0.4
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. +0.2 N.D. N.D. +0.4
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. +0.3 N.D. N.D. +0.3
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. +0.5 N.D. N.D. +0.2
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. +0.5 N.D. N.D. +0.2
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. +0.4 N.D. N.D. +0.3
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. +0.4 N.D. N.D. +0.4
clovis xylem sap Clovis xylem sap N.D. +0.4 N.D. N.D. +0.4
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.5 N.D. N.D. +0.4
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +0.3 N.D. N.D. +0.6
clovis xylem sap Clovis xylem sap N.D. +0.4 N.D. N.D. +0.5
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.3 N.D. N.D. +0.7
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.4 N.D. N.D. +0.6
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. +0.4 N.D. N.D. +0.7
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. +0.6 N.D. N.D. +0.6
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. +0.8 N.D. N.D. +0.9
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