Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4894.1 and Xcc-8004.4895.1 are separated by 15 nucleotidesXcc-8004.4895.1 and Xcc-8004.4896.1 overlap by 4 nucleotidesXcc-8004.4896.1 and Xcc-8004.4897.1 are separated by 42 nucleotidesXcc-8004.4897.1 and Xcc-8004.4898.1 are separated by 87 nucleotides Xcc-8004.4894.1: Xcc-8004.4894.1 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 4,652,882 to 4,655,224 Xcc-8004.4894.1 Xcc-8004.4895.1: Xcc-8004.4895.1 - Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), at 4,655,240 to 4,655,698 Xcc-8004.4895.1 Xcc-8004.4896.1: Xcc-8004.4896.1 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 4,655,695 to 4,656,954 Xcc-8004.4896.1 Xcc-8004.4897.1: Xcc-8004.4897.1 - DNA repair protein RadC, at 4,656,997 to 4,657,728 Xcc-8004.4897.1 Xcc-8004.4898.1: Xcc-8004.4898.1 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 4,657,816 to 4,659,504 Xcc-8004.4898.1
Group Condition Xcc-8004.4894.1 Xcc-8004.4895.1 Xcc-8004.4896.1 Xcc-8004.4897.1 Xcc-8004.4898.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.5 N.D. N.D. -0.4 N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.5 N.D. N.D. -0.3 N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.7 N.D. N.D. -0.1 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.7 N.D. N.D. -0.0 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.3 N.D. N.D. -0.4 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.1 N.D. N.D. -0.5 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.0 N.D. N.D. -0.5 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.2 N.D. N.D. -0.4 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.3 N.D. N.D. -0.3 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.0 N.D. N.D. -0.4 N.D.
control PBS control -0.1 N.D. N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. -0.4 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 +0.2 N.D. N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. N.D. +0.3 N.D.
carbon source D-Glucose 16.67 mM (C) -0.1 N.D. N.D. +0.4 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.2 N.D. N.D. +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 N.D. N.D. +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. +0.3 N.D.
r2a control R2A control +0.1 N.D. N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 N.D. N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 N.D. N.D. +0.8 N.D.
carbon source Citric Acid 16.67 mM (C) +0.0 N.D. N.D. +0.9 N.D.
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