Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4867.1 and Xcc-8004.4868.1 are separated by 17 nucleotidesXcc-8004.4868.1 and Xcc-8004.4869.1 are separated by 333 nucleotidesXcc-8004.4869.1 and Xcc-8004.4870.1 are separated by 226 nucleotidesXcc-8004.4870.1 and Xcc-8004.4871.1 are separated by 84 nucleotides Xcc-8004.4867.1: Xcc-8004.4867.1 - Mobile element protein, at 4,625,784 to 4,626,638 Xcc-8004.4867.1 Xcc-8004.4868.1: Xcc-8004.4868.1 - Mobile element protein, at 4,626,656 to 4,626,928 Xcc-8004.4868.1 Xcc-8004.4869.1: Xcc-8004.4869.1 - hypothetical protein, at 4,627,262 to 4,628,275 Xcc-8004.4869.1 Xcc-8004.4870.1: Xcc-8004.4870.1 - Mobile element protein, at 4,628,502 to 4,629,482 Xcc-8004.4870.1 Xcc-8004.4871.1: Xcc-8004.4871.1 - Phage tail completion protein, at 4,629,567 to 4,629,686 Xcc-8004.4871.1
Group Condition Xcc-8004.4867.1 Xcc-8004.4868.1 Xcc-8004.4869.1 Xcc-8004.4870.1 Xcc-8004.4871.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.0 N.D. -1.8
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. +0.3 N.D. -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.1 N.D. -1.5
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. -0.1 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.1 N.D. -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 N.D. -0.9
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. -0.0 N.D. -1.0
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. -0.0 N.D. -1.0
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. +0.2 N.D. -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.1 N.D. -0.9
clovis xylem sap Clovis xylem sap N.D. N.D. -0.0 N.D. -0.7
carbon source Citric Acid 10mM (C) N.D. N.D. +0.2 N.D. -0.7
clovis xylem sap Clovis xylem sap N.D. N.D. +0.1 N.D. -0.6
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. -0.4 N.D. +0.5
in planta xylem Xylemvessel barcodes T1L3P4 N.D. N.D. -0.2 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.1 N.D. +0.8
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. +0.1 N.D. +0.6
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.2 N.D. +0.5
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. N.D. +0.1 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.1 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.1 N.D. +0.6
carbon source D-Fructose 16.67 mM (C) N.D. N.D. +0.1 N.D. +0.6
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. +0.1 N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.0 N.D. +0.8
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. +0.1 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +0.2 N.D. +0.7
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. -0.0 N.D. +1.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. +0.2 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.1 N.D. +0.9
carbon source Citric Acid 16.67 mM (C) N.D. N.D. +0.2 N.D. +1.1
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