Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4762.1 and Xcc-8004.4763.1 are separated by 459 nucleotidesXcc-8004.4763.1 and Xcc-8004.4764.1 overlap by 4 nucleotidesXcc-8004.4764.1 and Xcc-8004.4766.1 are separated by 614 nucleotidesXcc-8004.4766.1 and Xcc-8004.4767.1 are separated by 39 nucleotides Xcc-8004.4762.1: Xcc-8004.4762.1 - FIG01210875: hypothetical protein, at 4,532,030 to 4,533,088 Xcc-8004.4762.1 Xcc-8004.4763.1: Xcc-8004.4763.1 - Helicase PriA essential for oriC/DnaA-independent DNA replication, at 4,533,548 to 4,535,656 Xcc-8004.4763.1 Xcc-8004.4764.1: Xcc-8004.4764.1 - Uncharacterized glutathione S-transferase-like protein, at 4,535,653 to 4,536,132 Xcc-8004.4764.1 Xcc-8004.4766.1: Xcc-8004.4766.1 - Helicase PriA essential for oriC/DnaA-independent DNA replication, at 4,536,747 to 4,537,004 Xcc-8004.4766.1 Xcc-8004.4767.1: Xcc-8004.4767.1 - FIG01209685: hypothetical protein, at 4,537,044 to 4,537,877 Xcc-8004.4767.1
Group Condition Xcc-8004.4762.1 Xcc-8004.4763.1 Xcc-8004.4764.1 Xcc-8004.4766.1 Xcc-8004.4767.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.6 N.D. -0.9 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 N.D. -0.5 N.D. -0.5
carbon source Citric Acid 16.67 mM (C) -0.5 N.D. -0.5 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.3 N.D. -0.2 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 N.D. -0.4 N.D. +0.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.4 N.D. -0.0 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -0.5 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. +0.1 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. -0.1 N.D. -0.3
carbon source Citric Acid 10mM (C) -0.0 N.D. +0.1 N.D. -0.8
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.5 N.D. +0.3 N.D. -0.4
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.9 N.D. +0.1 N.D. +0.2
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.2 N.D. -0.3 N.D. -0.4
carbon source Pectin from apple 2 g/L (C) -0.4 N.D. +0.2 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 N.D. -0.4 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 N.D. +0.2 N.D. -0.4
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.6 N.D. -0.1 N.D. +0.2
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.2 N.D. +0.4 N.D. -0.4
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.2 N.D. +0.1 N.D. -0.6
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days +0.1 N.D. +0.3 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. +0.3 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 N.D. +0.1 N.D. -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.2 N.D. +0.3 N.D. -0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.2 N.D. +0.4 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 N.D. -0.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. +0.6 N.D. +0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.0 N.D. +0.7 N.D. -0.3
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.1 N.D. +0.2 N.D. +0.4
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.4 N.D. +0.3 N.D. -0.2
in planta xylem Xylemvessel barcodes T0L1P3 +0.1 N.D. -0.1 N.D. +0.5
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