Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4756.1 and Xcc-8004.4757.1 are separated by 50 nucleotidesXcc-8004.4757.1 and Xcc-8004.4758.1 are separated by 104 nucleotidesXcc-8004.4758.1 and Xcc-8004.4759.1 are separated by 69 nucleotidesXcc-8004.4759.1 and Xcc-8004.4760.1 are separated by 84 nucleotides Xcc-8004.4756.1: Xcc-8004.4756.1 - FIG01211576: hypothetical protein, at 4,525,128 to 4,526,486 Xcc-8004.4756.1 Xcc-8004.4757.1: Xcc-8004.4757.1 - Short-chain dehydrogenase/reductase SDR, at 4,526,537 to 4,527,313 Xcc-8004.4757.1 Xcc-8004.4758.1: Xcc-8004.4758.1 - FIG01211401: hypothetical protein, at 4,527,418 to 4,527,633 Xcc-8004.4758.1 Xcc-8004.4759.1: Xcc-8004.4759.1 - protease IV, at 4,527,703 to 4,529,604 Xcc-8004.4759.1 Xcc-8004.4760.1: Xcc-8004.4760.1 - Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, at 4,529,689 to 4,531,065 Xcc-8004.4760.1
Group Condition Xcc-8004.4756.1 Xcc-8004.4757.1 Xcc-8004.4758.1 Xcc-8004.4759.1 Xcc-8004.4760.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.0 N.D. N.D. -2.0 -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.1 N.D. N.D. -1.8 -0.0
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.1 N.D. N.D. -1.6 -0.0
carbon source Citric Acid 10mM (C) +0.0 N.D. N.D. -0.9 -0.0
carbon source Citric Acid 16.67 mM (C) -0.1 N.D. N.D. -0.0 -0.7
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.1 N.D. N.D. -0.7 -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.2 N.D. N.D. -0.5 -0.0
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.0 N.D. N.D. -0.6 -0.1
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.2 N.D. N.D. -0.2 -0.3
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x +0.0 N.D. N.D. -0.6 -0.1
carbon source D-Fructose 16.67 mM (C) -0.2 N.D. N.D. -0.3 -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.0 N.D. N.D. -0.6 +0.1
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.0 N.D. N.D. -0.6 +0.1
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.1 N.D. N.D. -0.5 +0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.1 N.D. N.D. -0.5 -0.1
control PBS control +0.1 N.D. N.D. -0.5 -0.0
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.2 N.D. N.D. -0.6 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. -0.5 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. N.D. -0.3 +0.2
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x +0.2 N.D. N.D. -0.6 +0.1
in planta xylem Xylemvessel barcodes T1L3P4 -0.1 N.D. N.D. -0.4 +0.2
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.3 N.D. N.D. -0.1 +0.2
in planta xylem Xylemvessel barcodes T0L1P3 +0.4 N.D. N.D. -0.7 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. -0.4 +0.2
in planta xylem Xylemvessel barcodes T0L1P4 +0.1 N.D. N.D. -0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 N.D. N.D. -0.3 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. N.D. -0.2 -0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.2 N.D. N.D. +0.3 +0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.3 N.D. N.D. -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. N.D. +0.3 +0.2
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