Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.4752.1	Xcc-8004.4753.1	Xcc-8004.4754.1	Xcc-8004.4755.1	Xcc-8004.4756.1
carbon source	D-Glucose 16.67 mM (C)	-3.8	N.D.	+0.1	-0.1	-0.1
in planta xylem	Xylemvessel barcodes T1L3P4	-3.6	N.D.	-0.1	+0.1	-0.1
carbon source	Citric Acid 10mM (C)	-3.5	N.D.	-0.2	+0.2	+0.0
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-3.1	N.D.	+0.1	-0.1	-0.3
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-2.7	N.D.	-0.3	-0.5	+0.2
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-2.7	N.D.	+0.1	-0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.5	N.D.	-0.2	+0.0	-0.1
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-2.3	N.D.	-0.2	-0.2	-0.1
carbon source	D-Fructose 16.67 mM (C)	-2.6	N.D.	+0.0	+0.1	-0.2
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-2.0	N.D.	-0.1	-0.3	-0.3
in planta xylem	Xylemvessel barcodes T0L2P4	-2.1	N.D.	+0.1	-0.6	+0.1
carbon source	Citric Acid 16.67 mM (C)	-2.5	N.D.	-0.1	+0.4	-0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-1.8	N.D.	+0.0	-0.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.2	N.D.	+0.0	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-2.4	N.D.	-0.0	+0.2	+0.1
carbon source	Pectin from apple 2 g/L (C)	-2.0	N.D.	+0.0	-0.1	-0.1
in planta xylem	Xylemvessel barcodes T0L1P3	-2.8	N.D.	+0.2	+0.2	+0.4
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-1.4	N.D.	-0.2	-0.4	+0.0
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-2.0	N.D.	+0.0	+0.0	+0.1
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-1.5	N.D.	-0.1	-0.2	-0.0
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	-1.5	N.D.	-0.2	-0.1	-0.0
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-1.8	N.D.	+0.0	-0.2	+0.2
in planta xylem	Xylemvessel barcodes T0L1P4	-1.4	N.D.	-0.2	-0.2	+0.1
control	PBS control	-1.5	N.D.	+0.0	-0.1	-0.1
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	-1.4	N.D.	-0.0	+0.0	-0.1
moka	MOKA	-1.5	N.D.	+0.2	-0.1	-0.1
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x	-1.4	N.D.	+0.0	+0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.2	N.D.	-0.1	+0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.8	N.D.	-0.1	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.7	N.D.	+0.1	+0.3	+0.1