Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.4746.1	Xcc-8004.4747.1	Xcc-8004.4748.1	Xcc-8004.4750.1	Xcc-8004.4752.1
in planta xylem	Xylemvessel barcodes T1L3P4	-0.2	-0.2	-0.2	-0.1	-3.6
in planta xylem	Xylemvessel barcodes T0L2P4	-0.1	-1.1	-0.4	-0.2	-2.1
carbon source	D-Glucose 16.67 mM (C)	-0.1	-0.1	+0.0	+0.0	-3.8
carbon source	Citric Acid 10mM (C)	-0.1	+0.2	-0.3	-0.1	-3.5
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.3	+0.0	-0.2	-0.1	-3.1
carbon source	Citric Acid 16.67 mM (C)	-0.2	-0.4	-0.2	-0.2	-2.5
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	+0.1	-0.5	+0.1	-0.0	-2.7
carbon source	D-Fructose 16.67 mM (C)	-0.1	+0.1	-0.0	-0.1	-2.6
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.0	+0.1	-0.2	+0.1	-2.7
in planta xylem	Xylemvessel barcodes T0L1P3	+0.2	-0.1	-0.1	+0.1	-2.8
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-0.0	-0.3	-0.3	+0.0	-2.0
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.3	-0.2	+0.2	-0.0	-2.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.0	-0.0	+0.1	-0.1	-2.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.0	+0.0	-0.0	+0.1	-2.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.5	-0.5	-0.2	-0.9
moka	MOKA	-0.2	-0.3	-0.0	-0.2	-1.5
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	+0.4	-0.5	-0.0	-0.2	-1.8
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.1	-0.1	+0.1	-0.1	-2.0
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.1	-0.2	-0.3	+0.0	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.1	+0.1	+0.2	-0.1	-2.2
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.1	+0.1	-0.1	-0.2	-1.5
carbon source	Pectin from apple 2 g/L (C)	-0.0	+0.3	+0.1	+0.0	-2.0
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.1	-0.3	+0.1	+0.4	-1.8
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x	+0.3	-0.4	+0.1	+0.1	-1.4
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.1	-0.3	+0.3	+0.2	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.7	+0.2	+0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.7	-0.4	-0.4	+1.1
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.6	-0.5	+0.4	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.5	-0.4	-0.4	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.8	-0.1	-0.0	+1.8