Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.4732.1	Xcc-8004.4733.1	Xcc-8004.4734.1	Xcc-8004.4735.1	Xcc-8004.4736.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.1	-0.5	N.D.	-0.9	-0.1
r2a control	R2A control	-3.1	+0.0	N.D.	-0.2	-0.1
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-3.3	+0.3	N.D.	-0.2	-0.0
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	-2.9	-0.1	N.D.	-0.1	-0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-2.3	-0.2	N.D.	-0.4	-0.1
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	-2.9	-0.0	N.D.	+0.0	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.2	+0.2	N.D.	-0.4	-0.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-2.0	-0.1	N.D.	-0.4	-0.1
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-2.0	+0.2	N.D.	-0.4	-0.3
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-2.2	+0.1	N.D.	-0.2	-0.1
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-1.9	+0.0	N.D.	-0.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.5	+0.1	N.D.	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.9	-0.1	N.D.	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.6	-0.1	N.D.	-0.2	-0.2
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-1.7	-0.3	N.D.	+0.0	-0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-1.5	+0.1	N.D.	-0.2	-0.4
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-1.8	+0.0	N.D.	-0.1	-0.1
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-2.0	-0.1	N.D.	+0.2	+0.0
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-2.3	+0.1	N.D.	+0.2	+0.0
carbon source	Citric Acid 10mM (C)	-1.6	+0.2	N.D.	-0.4	-0.1
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-2.1	+0.2	N.D.	+0.1	-0.1
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x	-2.1	+0.2	N.D.	+0.2	-0.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-1.7	+0.1	N.D.	+0.2	-0.2
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-1.1	-0.3	N.D.	+0.3	-0.3
in planta xylem	Xylemvessel barcodes T0L1P4	-1.0	+0.5	N.D.	-0.6	-0.0
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.4	+0.5	N.D.	-1.0	-0.2
in planta xylem	Xylemvessel barcodes T0L2P4	-1.0	+0.7	N.D.	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.9	-0.1	N.D.	-1.1	+0.1
in planta xylem	Xylemvessel barcodes T0L1P3	-1.2	+0.7	N.D.	+0.8	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.6	+0.3	N.D.	+0.0	+0.1