Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 98 experiments or choose conditions or try the comparative fitness browser

500 ntXcc-8004.4562.1 and Xcc-8004.4563.1 overlap by 7 nucleotidesXcc-8004.4563.1 and Xcc-8004.4566.1 are separated by 484 nucleotidesXcc-8004.4566.1 and Xcc-8004.4567.1 are separated by 0 nucleotidesXcc-8004.4567.1 and Xcc-8004.4568.1 are separated by 118 nucleotides Xcc-8004.4562.1: Xcc-8004.4562.1 - Mobile element protein, at 4,358,876 to 4,359,139 Xcc-8004.4562.1 Xcc-8004.4563.1: Xcc-8004.4563.1 - Mobile element protein, at 4,359,133 to 4,359,978 Xcc-8004.4563.1 Xcc-8004.4566.1: Xcc-8004.4566.1 - putative; ORF located using Glimmer/Genemark, at 4,360,463 to 4,361,530 Xcc-8004.4566.1 Xcc-8004.4567.1: Xcc-8004.4567.1 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 4,361,531 to 4,362,895 Xcc-8004.4567.1 Xcc-8004.4568.1: Xcc-8004.4568.1 - FIG01210028: hypothetical protein, at 4,363,014 to 4,363,427 Xcc-8004.4568.1
Group Condition Xcc-8004.4562.1 Xcc-8004.4563.1 Xcc-8004.4566.1 Xcc-8004.4567.1 Xcc-8004.4568.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 N.D. -1.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. -0.4 N.D. -0.8
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. -0.0 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.0 N.D. -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.2 N.D. -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.1 N.D. -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 N.D. -0.8
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. +1.0 N.D. -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +0.0 N.D. -0.8
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. +0.2 N.D. -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.1 N.D. -0.8
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.2 N.D. -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.3 N.D. -0.7
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. +0.4 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.3 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.4 N.D. +0.4
in planta xylem Xylemvessel barcodes T0L1P3 N.D. N.D. -0.6 N.D. +1.1
carbon source D-Fructose 16.67 mM (C) N.D. N.D. -0.2 N.D. +0.7
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. +0.2 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.1 N.D. +0.8
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. -0.1 N.D. +0.9
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. +0.2 N.D. +0.7
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. +0.4 N.D. +0.6
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. -0.2 N.D. +1.2
carbon source Citric Acid 10mM (C) N.D. N.D. -0.0 N.D. +1.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. +0.7 N.D. +0.6
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. +0.1 N.D. +1.4
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. N.D. +0.4 N.D. +1.3
clovis xylem sap Clovis xylem sap N.D. N.D. +0.4 N.D. +1.5
remove
Xcc-8004.4562.1
plot		 remove
Xcc-8004.4563.1
plot		 remove
Xcc-8004.4566.1		 remove
Xcc-8004.4567.1
plot		 remove
Xcc-8004.4568.1
plot