Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.4508.1	Xcc-8004.4510.1	Xcc-8004.4513.1	Xcc-8004.4514.1	Xcc-8004.4517.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4	-4.9	N.D.	-1.4	-1.3
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.5	-4.0	N.D.	-3.1	-0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.7	-3.1	N.D.	-3.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-5.4	N.D.	-0.9	-0.6
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-1.2	-1.9	N.D.	-2.7	-1.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.9	-1.2	N.D.	-3.4	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.3	-2.7	N.D.	-1.9	-1.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.8	-1.2	N.D.	-3.3	-0.7
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.6	-3.6	N.D.	-1.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-5.2	N.D.	-0.2	-0.5
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.4	-2.9	N.D.	-1.7	-0.5
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.7	-1.7	N.D.	-2.4	-0.6
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.7	-1.7	N.D.	-2.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-5.0	N.D.	-0.1	-0.6
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.2	-5.0	N.D.	-0.1	-0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-1.2	+0.0	N.D.	-3.3	-0.6
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.7	-2.1	N.D.	-1.9	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-3.0	N.D.	-0.7	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.9	-1.2	N.D.	-1.6	-1.0
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-0.8	-1.8	N.D.	-1.1	-0.8
r2a control	R2A control	-0.5	-2.2	N.D.	-1.0	-0.7
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-0.7	-1.5	N.D.	-0.9	-0.9
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.0	-3.3	N.D.	-0.6	-0.0
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.6	-0.7	N.D.	-2.1	-0.5
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.9	-4.1	N.D.	-0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8	-3.0	N.D.	+0.5	-0.0
in planta xylem	Xylemvessel barcodes T0L2P4	+0.0	-2.5	N.D.	+1.0	+0.4
carbon source	Citric Acid 10mM (C)	+1.5	-0.7	N.D.	+1.8	+1.4
clovis xylem sap	Clovis xylem sap	+1.2	+0.4	N.D.	+2.0	+0.9
carbon source	Citric Acid 16.67 mM (C)	+3.1	+1.4	N.D.	+3.8	+4.1