Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.4487.1	Xcc-8004.4488.1	Xcc-8004.4489.1	Xcc-8004.4490.1	Xcc-8004.4491.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	-0.4	-0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.6	-0.2	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.1	-0.4	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.1	-0.3	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.3	-0.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.1	+0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.2	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.3	-0.2	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	+0.3	-0.3	-0.6
in planta xylem	Xylemvessel barcodes T0L1P4	N.D.	N.D.	+0.4	-0.1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.2	-0.1	-0.6
in planta xylem	Xylemvessel barcodes T1L3P4	N.D.	N.D.	-0.7	+0.0	+0.2
in planta xylem	Xylemvessel barcodes T0L1P3	N.D.	N.D.	-0.3	+0.3	-0.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	N.D.	N.D.	-0.1	-0.2	+0.5
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	N.D.	+0.1	+0.1	+0.6
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	N.D.	+0.4	+0.2	+0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	N.D.	+0.3	+0.3	+0.2
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	N.D.	+0.2	+0.3	+0.3
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	N.D.	+0.4	+0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.4	+0.4	+0.1
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	N.D.	N.D.	+0.2	+0.3	+0.6
carbon source	D-Glucose 16.67 mM (C)	N.D.	N.D.	+0.2	+0.3	+0.5
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	N.D.	+0.2	+0.2	+0.8
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	N.D.	N.D.	+0.1	+0.5	+0.6
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	N.D.	+0.1	+0.5	+0.8
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	N.D.	+0.4	+0.4	+0.7
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	N.D.	-0.2	+0.6	+1.2
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	N.D.	+0.5	+0.6	+0.5
carbon source	Citric Acid 10mM (C)	N.D.	N.D.	+0.4	+0.5	+0.9
carbon source	Citric Acid 16.67 mM (C)	N.D.	N.D.	+0.4	+1.0	+1.4