Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4485.1 and Xcc-8004.4486.1 are separated by 63 nucleotidesXcc-8004.4486.1 and Xcc-8004.4487.1 are separated by 228 nucleotidesXcc-8004.4487.1 and Xcc-8004.4488.1 overlap by 1 nucleotidesXcc-8004.4488.1 and Xcc-8004.4489.1 are separated by 59 nucleotides Xcc-8004.4485.1: Xcc-8004.4485.1 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 4,293,405 to 4,294,292 Xcc-8004.4485.1 Xcc-8004.4486.1: Xcc-8004.4486.1 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 4,294,356 to 4,295,411 Xcc-8004.4486.1 Xcc-8004.4487.1: Xcc-8004.4487.1 - Electron transfer flavoprotein, beta subunit, at 4,295,640 to 4,296,386 Xcc-8004.4487.1 Xcc-8004.4488.1: Xcc-8004.4488.1 - Electron transfer flavoprotein, alpha subunit, at 4,296,386 to 4,297,330 Xcc-8004.4488.1 Xcc-8004.4489.1: Xcc-8004.4489.1 - hypothetical protein, at 4,297,390 to 4,297,737 Xcc-8004.4489.1
Group Condition Xcc-8004.4485.1 Xcc-8004.4486.1 Xcc-8004.4487.1 Xcc-8004.4488.1 Xcc-8004.4489.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -3.3 -3.2 N.D. N.D. -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -2.9 -3.3 N.D. N.D. -0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -2.8 -2.8 N.D. N.D. +0.0
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -3.0 -2.6 N.D. N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -2.3 -1.7 N.D. N.D. -0.2
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -2.0 -1.7 N.D. N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -1.5 -1.3 N.D. N.D. -0.4
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.5 -1.8 N.D. N.D. +0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.4 -1.6 N.D. N.D. +0.1
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.3 -1.6 N.D. N.D. +0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -1.2 -1.3 N.D. N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -1.0 -1.4 N.D. N.D. +0.0
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -1.1 -1.0 N.D. N.D. -0.2
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -1.2 -1.1 N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -1.3 -1.0 N.D. N.D. -0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -1.1 -1.3 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -1.5 -1.1 N.D. N.D. +0.4
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.8 -1.6 N.D. N.D. +0.2
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -1.0 -1.0 N.D. N.D. -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -1.0 -0.9 N.D. N.D. -0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.9 -1.0 N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -0.7 N.D. N.D. -0.6
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.8 -0.7 N.D. N.D. -0.2
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.8 -1.0 N.D. N.D. +0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.8 -0.9 N.D. N.D. +0.2
in planta xylem Xylemvessel barcodes T0L1P3 +1.0 +0.7 N.D. N.D. -0.3
in planta xylem Xylemvessel barcodes T0L1P4 +0.8 +0.7 N.D. N.D. +0.4
carbon source Citric Acid 10mM (C) +1.3 +0.3 N.D. N.D. +0.4
carbon source Citric Acid 16.67 mM (C) +2.9 +1.1 N.D. N.D. +0.4
clovis xylem sap Clovis xylem sap +2.4 +2.5 N.D. N.D. +0.1
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