Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4443.1 and Xcc-8004.4444.1 overlap by 28 nucleotidesXcc-8004.4444.1 and Xcc-8004.4445.1 overlap by 4 nucleotidesXcc-8004.4445.1 and Xcc-8004.4446.1 are separated by 107 nucleotidesXcc-8004.4446.1 and Xcc-8004.4447.1 are separated by 114 nucleotides Xcc-8004.4443.1: Xcc-8004.4443.1 - putative; ORF located using Glimmer/Genemark, at 4,259,308 to 4,259,667 Xcc-8004.4443.1 Xcc-8004.4444.1: Xcc-8004.4444.1 - FIG000906: Predicted Permease, at 4,259,640 to 4,260,746 Xcc-8004.4444.1 Xcc-8004.4445.1: Xcc-8004.4445.1 - FIG000988: Predicted permease, at 4,260,743 to 4,261,825 Xcc-8004.4445.1 Xcc-8004.4446.1: Xcc-8004.4446.1 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 4,261,933 to 4,263,414 Xcc-8004.4446.1 Xcc-8004.4447.1: Xcc-8004.4447.1 - DNA polymerase III chi subunit (EC 2.7.7.7), at 4,263,529 to 4,263,954 Xcc-8004.4447.1
Group Condition Xcc-8004.4443.1 Xcc-8004.4444.1 Xcc-8004.4445.1 Xcc-8004.4446.1 Xcc-8004.4447.1
carbon source Citric Acid 16.67 mM (C) -0.1 N.D. N.D. -3.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. N.D. -1.4 N.D.
carbon source D-Fructose 16.67 mM (C) -0.0 N.D. N.D. -1.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. N.D. -1.4 N.D.
in planta xylem Xylemvessel barcodes T0L1P4 -0.5 N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 N.D. N.D. -1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. N.D. -0.8 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 -0.0 N.D. N.D. -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. N.D. -0.9 N.D.
moka MOKA +0.0 N.D. N.D. -1.0 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.4 N.D. N.D. -1.3 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.2 N.D. N.D. -0.7 N.D.
moka MOKA -0.2 N.D. N.D. -0.6 N.D.
in planta xylem Xylemvessel barcodes T0L2P4 -0.2 N.D. N.D. -0.7 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.1 N.D. N.D. -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. N.D. -0.8 N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +1.0 N.D. N.D. -1.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. -0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 N.D. N.D. -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. N.D. -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. N.D. -0.6 N.D.
carbon source Citric Acid 10mM (C) +0.2 N.D. N.D. -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 N.D. N.D. -0.6 N.D.
clovis xylem sap Clovis xylem sap +0.3 N.D. N.D. -0.7 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.3 N.D. N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. -0.5 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.6 N.D. N.D. -0.5 N.D.
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