Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotidesXcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotidesXcc-8004.4278.1 and Xcc-8004.4279.1 are separated by 54 nucleotidesXcc-8004.4279.1 and Xcc-8004.4280.1 overlap by 1 nucleotides Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761 Xcc-8004.4276.1 Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628 Xcc-8004.4277.1 Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515 Xcc-8004.4278.1 Xcc-8004.4279.1: Xcc-8004.4279.1 - FIG004694: Hypothetical protein, at 4,095,570 to 4,096,061 Xcc-8004.4279.1 Xcc-8004.4280.1: Xcc-8004.4280.1 - Beta-propeller domains of methanol dehydrogenase type, at 4,096,061 to 4,096,966 Xcc-8004.4280.1
Group Condition Xcc-8004.4276.1 Xcc-8004.4277.1 Xcc-8004.4278.1 Xcc-8004.4279.1 Xcc-8004.4280.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.3 -0.5
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.5 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.1 -0.4
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.3 -0.3
control PBS control N.D. N.D. N.D. -0.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.4 -0.0
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. N.D. +0.3 -0.7
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. +0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.2 -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.4 +0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. -0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +0.2 -0.3
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. +0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +0.5 -0.3
in planta xylem Xylemvessel barcodes T0L1P3 N.D. N.D. N.D. -0.1 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.1 +0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. N.D. N.D. +0.3 +0.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. N.D. +0.6 -0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. -0.0 +0.6
in planta xylem Xylemvessel barcodes T1L3P4 N.D. N.D. N.D. +0.3 +0.3
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. N.D. +0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.6 +0.1
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