Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.4262.1	Xcc-8004.4263.1	Xcc-8004.4264.1	Xcc-8004.4265.1	Xcc-8004.4266.1
in planta xylem	Xylemvessel barcodes T0L1P3	N.D.	-0.1	-3.5	+0.4	N.D.
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	+0.3	-2.5	-0.2	N.D.
carbon source	Citric Acid 16.67 mM (C)	N.D.	-0.4	+0.8	-2.8	N.D.
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	+0.0	-1.4	-0.1	N.D.
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	-0.0	-1.4	-0.0	N.D.
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	-0.1	-0.9	-0.2	N.D.
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	+0.2	-1.3	-0.1	N.D.
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	N.D.	-0.0	-1.1	+0.0	N.D.
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	+0.3	-1.2	-0.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.1	-0.9	+0.2	N.D.
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	N.D.	+0.2	-0.7	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.0	+1.2	-0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	+0.1	+1.0	-0.1	N.D.
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	+0.5	+0.4	+0.1	N.D.
clovis xylem sap	Clovis xylem sap	N.D.	+0.3	+0.5	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	+0.8	+0.3	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+0.9	+0.2	N.D.
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	N.D.	+0.1	+0.8	+0.1	N.D.
in planta xylem	Xylemvessel barcodes T0L1P4	N.D.	+0.3	+0.6	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.0	+0.8	+0.2	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	+0.0	+0.8	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	+1.3	+0.1	N.D.
clovis xylem sap	Clovis xylem sap	N.D.	-0.1	+1.3	+0.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.0	+0.9	+0.4	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.9	+0.3	N.D.
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-0.0	+0.6	+0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.0	+1.3	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.2	+1.5	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.0	+1.3	+0.5	N.D.
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	+0.1	+1.5	+0.3	N.D.