Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.4232.1 and Xcc-8004.4233.1 overlap by 4 nucleotidesXcc-8004.4233.1 and Xcc-8004.4234.1 are separated by 133 nucleotidesXcc-8004.4234.1 and Xcc-8004.4235.1 overlap by 32 nucleotidesXcc-8004.4235.1 and Xcc-8004.4236.1 are separated by 220 nucleotides Xcc-8004.4232.1: Xcc-8004.4232.1 - two-component system sensor protein, at 4,056,278 to 4,058,188 Xcc-8004.4232.1 Xcc-8004.4233.1: Xcc-8004.4233.1 - two-component system sensor protein, at 4,058,185 to 4,058,649 Xcc-8004.4233.1 Xcc-8004.4234.1: Xcc-8004.4234.1 - FIG01210050: hypothetical protein, at 4,058,783 to 4,059,046 Xcc-8004.4234.1 Xcc-8004.4235.1: Xcc-8004.4235.1 - hypothetical protein, at 4,059,015 to 4,059,656 Xcc-8004.4235.1 Xcc-8004.4236.1: Xcc-8004.4236.1 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 4,059,877 to 4,061,625 Xcc-8004.4236.1
Group Condition Xcc-8004.4232.1 Xcc-8004.4233.1 Xcc-8004.4234.1 Xcc-8004.4235.1 Xcc-8004.4236.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.2 -2.1 N.D. +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.4 N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -1.7 N.D. -0.1 N.D.
in planta xylem Xylemvessel barcodes T0L2P4 +0.0 -1.9 N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -1.9 N.D. +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.0 N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.9 N.D. -0.1 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 -0.0 -0.8 N.D. -0.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.1 -0.9 N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.2 N.D. -1.0 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.6 -1.1 N.D. +0.0 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.4 -0.8 N.D. -0.0 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.4 -1.0 N.D. +0.2 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.4 -0.5 N.D. -0.2 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.2 +0.6 N.D. -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.3 N.D. +0.4 N.D.
carbon source Citric Acid 16.67 mM (C) -0.1 +0.6 N.D. -0.5 N.D.
in planta xylem Xylemvessel barcodes T1L3P4 +0.3 -0.7 N.D. +0.4 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.2 +0.9 N.D. -0.7 N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) +0.4 -0.5 N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.8 N.D. -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.8 N.D. +0.1 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.2 +0.8 N.D. -0.2 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.0 +1.0 N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.8 N.D. +0.4 N.D.
r2a control R2A control +0.1 +1.0 N.D. -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 +1.3 N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.7 N.D. +0.1 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.3 +0.9 N.D. +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +1.9 N.D. +0.2 N.D.
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