Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.400.1	Xcc-8004.401.1	Xcc-8004.402.1	Xcc-8004.403.1	Xcc-8004.404.1
carbon source	D-Glucose 16.67 mM (C)	-3.1	-2.8	-4.3	-5.4	-0.0
carbon source	D-Fructose 16.67 mM (C)	-3.2	-2.5	-4.1	-2.9	+0.1
carbon source	Citric Acid 16.67 mM (C)	-2.7	-0.7	-2.9	-4.6	+0.4
carbon source	Pectin from apple 2 g/L (C)	-2.2	-2.3	-2.7	-3.3	+0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.5	-3.1	-3.5	-1.9	-0.1
carbon source	Citric Acid 10mM (C)	-2.2	-1.1	-3.3	-2.5	+0.4
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.6	-2.0	-1.9	-2.6	-0.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.1	-0.8	-2.5	-3.4	-0.1
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.3	-0.5	-1.6	-4.4	-0.5
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.4	-1.4	-1.8	-1.7	+0.1
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.0	-2.1	-2.0	-1.1	-0.1
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.2	-1.3	-0.9	-1.8	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-3.5	-0.1	-0.3	+0.1
clovis xylem sap	Clovis xylem sap	-1.1	-1.0	-0.6	-1.5	+0.2
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-0.2	-0.4	-1.5	-1.2	-0.3
in planta xylem	Xylemvessel barcodes T0L2P4	+0.3	-3.1	-0.8	-0.1	+0.2
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.5	-1.4	-0.5	-0.7	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-3.9	+0.2	+0.2	-0.0
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.7	+0.7	-1.6	-1.7	+0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	+0.2	-1.4	-0.2	-1.6	-0.1
clovis xylem sap	Clovis xylem sap	-0.4	-0.5	-1.1	-1.1	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.3	-2.3	-0.3	-0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-3.1	+0.2	-0.4	+0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.4	-0.8	-0.4	-1.1	+0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	+0.1	-1.2	-0.8	-0.5	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-1.6	+0.5	+0.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-1.1	+0.6	-1.2	+0.0
clovis xylem sap	Clovis xylem sap	+0.1	+0.6	-0.7	-1.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-1.5	+0.5	+0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-1.6	+0.5	+0.6	+0.4