Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3997.1 and Xcc-8004.3998.1 are separated by 644 nucleotidesXcc-8004.3998.1 and Xcc-8004.3999.1 are separated by 89 nucleotidesXcc-8004.3999.1 and Xcc-8004.4000.1 are separated by 96 nucleotidesXcc-8004.4000.1 and Xcc-8004.4001.1 are separated by 111 nucleotides Xcc-8004.3997.1: Xcc-8004.3997.1 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 3,873,069 to 3,874,013 Xcc-8004.3997.1 Xcc-8004.3998.1: Xcc-8004.3998.1 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41), at 3,874,658 to 3,875,635 Xcc-8004.3998.1 Xcc-8004.3999.1: Xcc-8004.3999.1 - LSU ribosomal protein L32p, at 3,875,725 to 3,875,919 Xcc-8004.3999.1 Xcc-8004.4000.1: Xcc-8004.4000.1 - COG1399 protein, clustered with ribosomal protein L32p, at 3,876,016 to 3,876,525 Xcc-8004.4000.1 Xcc-8004.4001.1: Xcc-8004.4001.1 - FIG146278: Maf/YceF/YhdE family protein, at 3,876,637 to 3,877,215 Xcc-8004.4001.1
Group Condition Xcc-8004.3997.1 Xcc-8004.3998.1 Xcc-8004.3999.1 Xcc-8004.4000.1 Xcc-8004.4001.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -2.4 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -2.5 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -1.7 -1.4
in planta xylem Xylemvessel barcodes T0L1P3 N.D. N.D. N.D. -0.5 -2.1
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. N.D. -1.7 -0.7
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -1.5 -0.9
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. -0.6 -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.5 -0.5
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. N.D. -0.9 -0.9
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. N.D. -2.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -1.1 -0.5
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. N.D. N.D. -0.6 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.7 -0.6
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. N.D. N.D. -0.3 -0.9
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -1.7 +0.6
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. -1.5 +0.5
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. -1.9 +1.2
in planta xylem Xylemvessel barcodes T1L3P4 N.D. N.D. N.D. -1.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +1.5 -2.0
control PBS control N.D. N.D. N.D. -1.1 +0.8
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -0.9 +0.6
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. N.D. N.D. +1.0 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +1.2 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +1.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +1.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +1.3 -0.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.3 +2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.8 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.7 +1.0
carbon source Citric Acid 16.67 mM (C) N.D. N.D. N.D. +1.7 +1.0
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