Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3996.1 and Xcc-8004.3997.1 are separated by 78 nucleotidesXcc-8004.3997.1 and Xcc-8004.3998.1 are separated by 644 nucleotidesXcc-8004.3998.1 and Xcc-8004.3999.1 are separated by 89 nucleotidesXcc-8004.3999.1 and Xcc-8004.4000.1 are separated by 96 nucleotides Xcc-8004.3996.1: Xcc-8004.3996.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 3,872,247 to 3,872,990 Xcc-8004.3996.1 Xcc-8004.3997.1: Xcc-8004.3997.1 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 3,873,069 to 3,874,013 Xcc-8004.3997.1 Xcc-8004.3998.1: Xcc-8004.3998.1 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41), at 3,874,658 to 3,875,635 Xcc-8004.3998.1 Xcc-8004.3999.1: Xcc-8004.3999.1 - LSU ribosomal protein L32p, at 3,875,725 to 3,875,919 Xcc-8004.3999.1 Xcc-8004.4000.1: Xcc-8004.4000.1 - COG1399 protein, clustered with ribosomal protein L32p, at 3,876,016 to 3,876,525 Xcc-8004.4000.1
Group Condition Xcc-8004.3996.1 Xcc-8004.3997.1 Xcc-8004.3998.1 Xcc-8004.3999.1 Xcc-8004.4000.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -2.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -2.4
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. N.D. N.D. -2.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -1.9
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. N.D. N.D. -1.7
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. -1.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.5
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. N.D. -1.5
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -1.5
in planta xylem Xylemvessel barcodes T1L3P4 N.D. N.D. N.D. N.D. -1.2
control PBS control N.D. N.D. N.D. N.D. -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -1.1
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. N.D. N.D. -1.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. -0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. N.D. N.D. -0.9
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. N.D. -0.7
control PBS control N.D. N.D. N.D. N.D. -0.7
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.9
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. N.D. +0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. N.D. N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +1.5
carbon source Citric Acid 16.67 mM (C) N.D. N.D. N.D. N.D. +1.7
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