Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3990.1 and Xcc-8004.3991.1 overlap by 4 nucleotidesXcc-8004.3991.1 and Xcc-8004.3992.1 are separated by 60 nucleotidesXcc-8004.3992.1 and Xcc-8004.3993.1 are separated by 161 nucleotidesXcc-8004.3993.1 and Xcc-8004.3995.1 are separated by 140 nucleotides Xcc-8004.3990.1: Xcc-8004.3990.1 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 3,866,884 to 3,867,843 Xcc-8004.3990.1 Xcc-8004.3991.1: Xcc-8004.3991.1 - FIG004453: protein YceG like, at 3,867,840 to 3,868,898 Xcc-8004.3991.1 Xcc-8004.3992.1: Xcc-8004.3992.1 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 3,868,959 to 3,870,314 Xcc-8004.3992.1 Xcc-8004.3993.1: Xcc-8004.3993.1 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 3,870,476 to 3,871,711 Xcc-8004.3993.1 Xcc-8004.3995.1: Xcc-8004.3995.1 - Acyl carrier protein, at 3,871,852 to 3,872,091 Xcc-8004.3995.1
Group Condition Xcc-8004.3990.1 Xcc-8004.3991.1 Xcc-8004.3992.1 Xcc-8004.3993.1 Xcc-8004.3995.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.5 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.6 -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.4 -0.3 N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. +0.2 -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.4 -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 -0.3 N.D. N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.4 -1.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.5 -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.4 -0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 -0.1 N.D. N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.4 -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.2 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.1 -0.3 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.1 -0.5 N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.5 -0.9 N.D. N.D.
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -0.4 +0.1 N.D. N.D.
carbon source Citric Acid 10mM (C) N.D. +0.3 -0.3 N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. +0.4 -0.3 N.D. N.D.
clovis xylem sap Clovis xylem sap N.D. +0.4 -0.2 N.D. N.D.
carbon source D-Fructose 16.67 mM (C) N.D. +0.5 -0.2 N.D. N.D.
in planta xylem Xylemvessel barcodes T0L1P4 N.D. +0.4 +0.1 N.D. N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. +0.5 -0.0 N.D. N.D.
clovis xylem sap Clovis xylem sap N.D. +0.4 +0.1 N.D. N.D.
carbon source Pectin from apple 2 g/L (C) N.D. +0.4 +0.1 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.9 -0.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +1.1 -0.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.9 +0.1 N.D. N.D.
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