Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.3965.1	Xcc-8004.3966.1	Xcc-8004.3968.1	Xcc-8004.3970.1	Xcc-8004.3974.1
in planta xylem	Xylemvessel barcodes T0L1P4	-0.3	-0.4	-1.7	-0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-0.0	-1.4	-0.1	-0.2
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-1.7	+0.0	-0.5	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	-0.0	-1.4	+0.2	+0.3
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.7	-0.3	-0.4	-0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	-0.9	-0.1	+0.1
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-0.5	-0.2	-0.4	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+0.1	-0.7	+0.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.1	-0.4	-0.0	-0.4
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.8	-0.2	+0.3	+0.1	-0.3
carbon source	Citric Acid 10mM (C)	+0.2	-0.0	-0.6	+0.2	-0.6
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.2	-0.3	-0.6	+0.2	+0.1
in planta xylem	Xylemvessel barcodes T0L2P4	+0.2	-0.1	-1.1	+0.0	+0.3
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x	+0.3	-0.4	+0.0	-0.0	-0.5
in planta xylem	Xylemvessel barcodes T1L3P4	-1.2	+0.0	+1.1	-0.2	-0.4
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.6	+0.4	-0.6	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.3	-0.5	+0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.2	-0.5	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.1	-0.8	-0.1	+0.5
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-1.3	+0.3	+0.2	-0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.2	-0.7	-0.1	+0.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.5	-0.1	+0.3	-0.2	+0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	+0.2	+0.3	-0.7	-0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	-0.4	-0.3	+0.1	+0.2
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	+0.6	+0.3	-0.8	-0.0	-0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-0.8	+0.2	+0.4	+0.2	+0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.2	-0.3	+0.9	+0.2	-0.8
carbon source	Pectin from apple 2 g/L (C)	+0.8	-0.2	+0.0	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.1	+0.6	+0.0	-0.3
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.5	+0.8	-0.4	-0.0	+0.2