Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.3849.1	Xcc-8004.3851.1	Xcc-8004.3852.1	Xcc-8004.3853.1	Xcc-8004.3854.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-0.6	N.D.	-0.3	-0.3	-0.6
clovis xylem sap	Clovis xylem sap	-0.2	N.D.	-0.7	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	N.D.	+0.1	-0.3	-0.8
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.3	N.D.	-0.7	+0.1	-0.8
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	+0.2	N.D.	-0.3	+0.2	-1.6
control	PBS control	+0.4	N.D.	-0.7	-1.0	+0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.2	N.D.	+0.3	-2.1	+0.7
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.8	N.D.	+0.9	-1.0	-0.2
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.3	N.D.	+0.2	-1.2	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4	N.D.	-0.9	+0.6	-0.1
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-0.3	N.D.	-1.2	+1.3	-0.7
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.3	N.D.	-1.2	+0.7	+0.1
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.3	N.D.	-0.3	+0.6	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.2	N.D.	-1.5	+0.7	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.0	N.D.	-1.7	+1.1	+0.0
in planta xylem	Xylemvessel barcodes T0L2P4	+0.2	N.D.	+0.0	-1.1	+0.8
r2a control	R2A control	-0.3	N.D.	-0.8	+0.5	+0.6
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.1	N.D.	-1.0	+1.0	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.1	N.D.	-0.9	+0.8	+0.2
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.4	N.D.	+0.7	+0.9	-0.4
carbon source	Citric Acid 10mM (C)	-0.1	N.D.	-0.6	+1.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	N.D.	-0.3	+1.4	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.1	N.D.	+0.5	+1.0	-0.2
in planta xylem	Xylemvessel barcodes T0L1P4	+0.2	N.D.	-0.3	+1.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	+0.2	+1.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	N.D.	+0.6	+1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	N.D.	+0.1	+1.4	+0.1
carbon source	D-Glucose 16.67 mM (C)	-0.1	N.D.	+0.5	+0.8	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	N.D.	-0.7	+2.0	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	N.D.	+0.3	+1.5	+0.4