Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3827.1 and Xcc-8004.3828.1 are separated by 250 nucleotidesXcc-8004.3828.1 and Xcc-8004.3829.1 are separated by 12 nucleotidesXcc-8004.3829.1 and Xcc-8004.3830.1 are separated by 190 nucleotidesXcc-8004.3830.1 and Xcc-8004.3831.1 overlap by 1 nucleotides Xcc-8004.3827.1: Xcc-8004.3827.1 - GTP-binding protein Obg, at 3,703,573 to 3,704,625 Xcc-8004.3827.1 Xcc-8004.3828.1: Xcc-8004.3828.1 - LSU ribosomal protein L27p, at 3,704,876 to 3,705,136 Xcc-8004.3828.1 Xcc-8004.3829.1: Xcc-8004.3829.1 - LSU ribosomal protein L21p, at 3,705,149 to 3,705,469 Xcc-8004.3829.1 Xcc-8004.3830.1: Xcc-8004.3830.1 - Excinuclease ABC subunit A, at 3,705,660 to 3,708,728 Xcc-8004.3830.1 Xcc-8004.3831.1: Xcc-8004.3831.1 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 3,708,728 to 3,709,132 Xcc-8004.3831.1
Group Condition Xcc-8004.3827.1 Xcc-8004.3828.1 Xcc-8004.3829.1 Xcc-8004.3830.1 Xcc-8004.3831.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -0.8 -0.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -0.4 -0.9
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.6 -0.7
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. N.D. -0.3 -0.9
r2a control R2A control N.D. N.D. N.D. -0.6 -0.6
in planta xylem Xylemvessel barcodes T1L3P4 N.D. N.D. N.D. -1.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.1 -0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. N.D. N.D. -0.6 -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. N.D. -0.3 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.4 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.3 -0.6
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -1.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.0 -0.8
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. N.D. -0.5 -0.3
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. N.D. -0.2 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -0.5 -0.3
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. N.D. -0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +0.2 -0.8
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -0.7 +0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. N.D. N.D. -0.7 +0.3
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. +0.3 -0.6
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. -0.4 +0.4
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.5 +1.0
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. N.D. +0.1 +0.7
carbon source D-Glucose 16.67 mM (C) N.D. N.D. N.D. +1.0 -0.1
carbon source Citric Acid 16.67 mM (C) N.D. N.D. N.D. +0.4 +0.6
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. +1.2 +0.6
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Xcc-8004.3827.1
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Xcc-8004.3828.1
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Xcc-8004.3830.1
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