Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 98 experiments or choose conditions or try the comparative fitness browser

500 ntXcc-8004.3817.1 and Xcc-8004.3820.1 are separated by 508 nucleotidesXcc-8004.3820.1 and Xcc-8004.3821.1 are separated by 135 nucleotidesXcc-8004.3821.1 and Xcc-8004.3822.1 are separated by 152 nucleotidesXcc-8004.3822.1 and Xcc-8004.3823.1 are separated by 6 nucleotides Xcc-8004.3817.1: Xcc-8004.3817.1 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 3,693,925 to 3,694,974 Xcc-8004.3817.1 Xcc-8004.3820.1: Xcc-8004.3820.1 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 3,695,483 to 3,696,433 Xcc-8004.3820.1 Xcc-8004.3821.1: Xcc-8004.3821.1 - Lipoprotein signal peptidase (EC 3.4.23.36), at 3,696,569 to 3,697,186 Xcc-8004.3821.1 Xcc-8004.3822.1: Xcc-8004.3822.1 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 3,697,339 to 3,700,170 Xcc-8004.3822.1 Xcc-8004.3823.1: Xcc-8004.3823.1 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 3,700,177 to 3,701,265 Xcc-8004.3823.1
Group Condition Xcc-8004.3817.1 Xcc-8004.3820.1 Xcc-8004.3821.1 Xcc-8004.3822.1 Xcc-8004.3823.1
carbon source Citric Acid 16.67 mM (C) -2.3 N.D. -0.6 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.7 N.D. -1.6 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.8 N.D. -1.1 N.D. N.D.
carbon source Citric Acid 10mM (C) -1.3 N.D. -0.6 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -1.4 N.D. -0.2 N.D. N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.2 N.D. -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. -0.7 N.D. N.D.
in planta xylem Xylemvessel barcodes T0L1P4 -1.1 N.D. -0.2 N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.1 N.D. -0.1 N.D. N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -1.0 N.D. -0.1 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.9 N.D. -0.2 N.D. N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.8 N.D. -0.2 N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.3 N.D. -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. -1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 N.D. -0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 N.D. +0.0 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. -0.2 N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.8 N.D. -0.1 N.D. N.D.
in planta xylem Xylemvessel barcodes T1L3P4 -0.6 N.D. -0.3 N.D. N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -1.1 N.D. +0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 N.D. +0.5 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.9 N.D. +0.3 N.D. N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.8 N.D. +0.3 N.D. N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.7 N.D. +0.3 N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.6 N.D. +0.3 N.D. N.D.
in planta xylem Xylemvessel barcodes T0L2P4 -1.1 N.D. +1.2 N.D. N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.3 N.D. +0.6 N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.2 N.D. +0.7 N.D. N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.8 N.D. +1.4 N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.3 N.D. +0.9 N.D. N.D.
remove
Xcc-8004.3817.1
plot		 remove
Xcc-8004.3820.1
plot		 remove
Xcc-8004.3821.1		 remove
Xcc-8004.3822.1
plot		 remove
Xcc-8004.3823.1
plot