Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3765.1 and Xcc-8004.3766.1 are separated by 48 nucleotidesXcc-8004.3766.1 and Xcc-8004.3767.1 are separated by 64 nucleotidesXcc-8004.3767.1 and Xcc-8004.3769.1 are separated by 43 nucleotidesXcc-8004.3769.1 and Xcc-8004.3770.1 are separated by 108 nucleotides Xcc-8004.3765.1: Xcc-8004.3765.1 - LSU ribosomal protein L19p, at 3,640,830 to 3,641,333 Xcc-8004.3765.1 Xcc-8004.3766.1: Xcc-8004.3766.1 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 3,641,382 to 3,642,140 Xcc-8004.3766.1 Xcc-8004.3767.1: Xcc-8004.3767.1 - 16S rRNA processing protein RimM, at 3,642,205 to 3,642,717 Xcc-8004.3767.1 Xcc-8004.3769.1: Xcc-8004.3769.1 - SSU ribosomal protein S16p, at 3,642,761 to 3,643,021 Xcc-8004.3769.1 Xcc-8004.3770.1: Xcc-8004.3770.1 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 3,643,130 to 3,643,927 Xcc-8004.3770.1
Group Condition Xcc-8004.3765.1 Xcc-8004.3766.1 Xcc-8004.3767.1 Xcc-8004.3769.1 Xcc-8004.3770.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. N.D. N.D. N.D. -1.5
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. N.D. -1.5
carbon source Citric Acid 16.67 mM (C) N.D. N.D. N.D. N.D. -1.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. N.D. -0.8
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. N.D. -0.7
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. N.D. -0.6
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.5
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. N.D. N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -0.4
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. N.D. N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes T0L1P3 N.D. N.D. N.D. N.D. -0.4
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. N.D. N.D. N.D. -0.4
moka MOKA N.D. N.D. N.D. N.D. -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -0.3
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. -0.3
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. -0.3
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.3
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.3
moka MOKA N.D. N.D. N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. N.D. N.D. +0.3
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. N.D. +0.4
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