Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3734.1 and Xcc-8004.3735.1 are separated by 4 nucleotidesXcc-8004.3735.1 and Xcc-8004.3736.1 overlap by 4 nucleotidesXcc-8004.3736.1 and Xcc-8004.3737.1 overlap by 4 nucleotidesXcc-8004.3737.1 and Xcc-8004.3738.1 are separated by 10 nucleotides Xcc-8004.3734.1: Xcc-8004.3734.1 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 3,610,239 to 3,610,883 Xcc-8004.3734.1 Xcc-8004.3735.1: Xcc-8004.3735.1 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 3,610,888 to 3,611,148 Xcc-8004.3735.1 Xcc-8004.3736.1: Xcc-8004.3736.1 - HpaA protein, at 3,611,145 to 3,611,960 Xcc-8004.3736.1 Xcc-8004.3737.1: Xcc-8004.3737.1 - hypothetical protein, at 3,611,957 to 3,612,904 Xcc-8004.3737.1 Xcc-8004.3738.1: Xcc-8004.3738.1 - HrpD6 protein, at 3,612,915 to 3,613,157 Xcc-8004.3738.1
Group Condition Xcc-8004.3734.1 Xcc-8004.3735.1 Xcc-8004.3736.1 Xcc-8004.3737.1 Xcc-8004.3738.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -1.3 N.D. N.D. -2.7 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -1.3 N.D. N.D. -0.6 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.9 N.D. N.D. -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. N.D. -0.8 N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.3 N.D. N.D. -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.7 N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. N.D. -0.7 N.D.
in planta xylem Xylemvessel barcodes T1L3P4 -0.1 N.D. N.D. -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. N.D. -1.3 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days +0.1 N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. N.D. -0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. N.D. -0.7 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.2 N.D. N.D. -0.9 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.3 N.D. N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 N.D. N.D. -1.0 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.4 N.D. N.D. -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 N.D. N.D. -0.1 N.D.
clovis xylem sap Clovis xylem sap +0.7 N.D. N.D. +0.2 N.D.
carbon source Citric Acid 10mM (C) +0.4 N.D. N.D. +0.5 N.D.
carbon source Pectin from apple 2 g/L (C) +0.6 N.D. N.D. +0.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.7 N.D. N.D. +0.2 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.6 N.D. N.D. +0.4 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.3 N.D. N.D. +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 N.D. N.D. +0.3 N.D.
carbon source Citric Acid 16.67 mM (C) +0.9 N.D. N.D. +0.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +1.0 N.D. N.D. +0.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.7 N.D. N.D. +0.9 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.7 N.D. N.D. +1.1 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +1.9 N.D. N.D. +0.6 N.D.
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