Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3726.1 and Xcc-8004.3727.1 are separated by 1 nucleotidesXcc-8004.3727.1 and Xcc-8004.3728.1 are separated by 31 nucleotidesXcc-8004.3728.1 and Xcc-8004.3730.1 are separated by 212 nucleotidesXcc-8004.3730.1 and Xcc-8004.3731.1 are separated by 8 nucleotides Xcc-8004.3726.1: Xcc-8004.3726.1 - Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ), at 3,603,708 to 3,604,472 Xcc-8004.3726.1 Xcc-8004.3727.1: Xcc-8004.3727.1 - hypothetical protein, at 3,604,474 to 3,604,866 Xcc-8004.3727.1 Xcc-8004.3728.1: Xcc-8004.3728.1 - hypothetical protein, at 3,604,898 to 3,605,353 Xcc-8004.3728.1 Xcc-8004.3730.1: Xcc-8004.3730.1 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 3,605,566 to 3,606,639 Xcc-8004.3730.1 Xcc-8004.3731.1: Xcc-8004.3731.1 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 3,606,648 to 3,608,570 Xcc-8004.3731.1
Group Condition Xcc-8004.3726.1 Xcc-8004.3727.1 Xcc-8004.3728.1 Xcc-8004.3730.1 Xcc-8004.3731.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.5 N.D. -3.2 N.D. -4.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.9 N.D. -2.7 N.D. -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. -5.2 N.D. +0.2
in planta xylem Xylemvessel barcodes T0L1P3 -3.3 N.D. -2.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.9 N.D. -1.0 N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.4 N.D. -0.3 N.D. -3.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.3 N.D. -2.6 N.D. -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. -1.9 N.D. -1.7
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -2.7 N.D. -0.9 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. -5.1 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.8 N.D. -1.8 N.D. -0.4
in planta xylem Xylemvessel barcodes T0L2P4 -1.5 N.D. -3.4 N.D. +0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.0 N.D. -2.9 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 N.D. -3.0 N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.7 N.D. -1.5 N.D. -1.5
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -1.6 N.D. -0.9 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.2 N.D. -2.1 N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -1.0 N.D. -2.4 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.0 N.D. +0.6 N.D. -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 N.D. -2.4 N.D. +0.2
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.6 N.D. -3.3 N.D. -0.3
control PBS control -0.4 N.D. -2.9 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 N.D. -3.7 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.8 N.D. +0.0 N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -1.4 N.D. -1.2 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. -1.0 N.D. -0.9
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +1.4 N.D. -0.3 N.D. -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.6 N.D. +0.2 N.D. -1.7
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.1 N.D. -0.4 N.D. +1.8
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +2.1 N.D. -0.4 N.D. +1.1
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Xcc-8004.3726.1
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Xcc-8004.3727.1
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Xcc-8004.3730.1
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Xcc-8004.3731.1
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