Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.3718.1	Xcc-8004.3720.1	Xcc-8004.3721.1	Xcc-8004.3722.1	Xcc-8004.3723.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.1	-5.1	-0.0	-2.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	-1.2	+0.1	-4.3	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.2	+0.9	-5.3	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.2	-3.6	-0.7	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.3	-3.5	-0.6	-0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	-1.8	+0.2	-1.3	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.2	-1.2	-0.8	-1.7
r2a control	R2A control	N.D.	-0.6	-0.7	-1.2	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	-2.3	-0.2	-1.2
carbon source	Citric Acid 10mM (C)	N.D.	+0.1	-4.0	+1.1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.5	-0.8	-0.7	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	-0.5	-0.6	-2.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.0	-1.3	+0.1	-2.0
carbon source	Citric Acid 16.67 mM (C)	N.D.	-0.1	-2.5	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.4	-1.5	-1.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.9	-1.3	+0.9	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.5	-1.2	+0.4	-1.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	-0.1	-1.6	+0.4	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.3	-1.9	+0.4	-0.3
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	+0.9	-1.2	-1.7	+0.3
supernatant	Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	N.D.	+0.1	-0.9	-1.5	+0.6
in planta xylem	Xylemvessel barcodes T0L2P4	N.D.	-0.7	-0.7	+1.0	-0.9
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	+0.2	-1.6	+1.7	-0.5
in planta xylem	Xylemvessel barcodes T0L1P3	N.D.	-0.5	-0.5	+2.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.3	-1.0	-0.4	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.2	+0.2	-1.6	+1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+2.1	+0.1	-1.0
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	+0.6	+1.3	+0.8	-0.4
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	-0.0	+2.0	+0.4	+0.9
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	+1.2	+2.6	+0.5	-0.8