Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.3706.1	Xcc-8004.3708.1	Xcc-8004.3710.1	Xcc-8004.3712.1	Xcc-8004.3713.1
in planta xylem	Xylemvessel barcodes T1L3P4	+0.1	+0.0	-3.1	N.D.	+0.3
in planta xylem	Xylemvessel barcodes T0L2P4	+0.2	-0.0	-2.4	N.D.	+0.0
in planta xylem	Xylemvessel barcodes T0L1P3	-0.0	-0.1	-2.0	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.0	-2.0	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	+0.1	-1.6	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	-1.4	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.0	-1.3	N.D.	-0.1
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.2	+0.2	-1.6	N.D.	+0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	+0.1	+0.0	-1.3	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.1	-1.0	N.D.	-0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-0.3	-0.0	-0.6	N.D.	-0.1
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.3	+0.1	-1.9	N.D.	+0.5
control	PBS control	+0.1	-0.2	-0.5	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.2	-0.9	N.D.	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	+0.2	-0.9	N.D.	-0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	+0.1	+0.1	-0.9	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.1	-0.6	N.D.	-0.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	+0.1	+0.2	-0.5	N.D.	+0.3
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.2	-0.3	+0.5	N.D.	+0.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.2	-0.2	+0.1	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	+0.2	+0.8	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.0	+0.9	N.D.	+0.3
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.0	-0.3	+0.8	N.D.	+0.6
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.1	+0.1	+1.2	N.D.	+0.0
carbon source	D-Glucose 16.67 mM (C)	+0.1	-0.1	+1.0	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	+0.1	+1.0	N.D.	+0.2
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	+0.2	+0.1	+0.8	N.D.	+0.3
carbon source	Citric Acid 16.67 mM (C)	+0.2	+0.3	+0.8	N.D.	+0.1
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.1	+0.1	+1.1	N.D.	+0.3
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.4	-0.3	+2.2	N.D.	-0.0