Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.3616.1	Xcc-8004.3617.1	Xcc-8004.3619.1	Xcc-8004.3620.1	Xcc-8004.3621.1
carbon source	D-Fructose 16.67 mM (C)	-0.7	-0.1	+0.2	-0.9	N.D.
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.8	-1.4	+0.8	+0.1	N.D.
moka	MOKA	-0.3	-0.0	-0.3	-0.6	N.D.
carbon source	D-Glucose 16.67 mM (C)	-1.0	-0.2	+0.1	-0.2	N.D.
carbon source	Citric Acid 10mM (C)	-0.6	+0.3	-0.2	-0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.3	-0.2	-0.6	N.D.
clovis xylem sap	Clovis xylem sap	+0.0	-0.0	-0.4	-0.6	N.D.
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	+0.1	-0.0	-0.4	-0.8	N.D.
clovis xylem sap	Clovis xylem sap	-0.1	-0.3	+0.1	-0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.7	+0.2	-0.1	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.6	+0.2	+0.0	-0.3	N.D.
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x	-0.4	+0.3	-0.2	-0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.0	+0.3	-0.4	-0.5	N.D.
carbon source	Citric Acid 16.67 mM (C)	-0.2	+0.1	+0.5	-0.9	N.D.
r2a control	R2A control	-0.4	+0.7	-0.3	-0.5	N.D.
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	+0.1	-0.2	+0.3	-0.5	N.D.
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.1	-0.6	+0.0	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.0	+0.4	-0.5	N.D.
clovis xylem sap	Clovis xylem sap	-0.0	+0.5	-0.2	-0.5	N.D.
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.5	+0.5	+0.0	-0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.1	+0.3	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.3	+0.4	+0.4	N.D.
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.3	+0.1	+0.4	+0.4	N.D.
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.2	-0.3	+0.2	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.1	+0.1	+1.0	N.D.
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.1	-0.3	+0.3	+0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.7	+0.4	+0.1	N.D.
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	+0.2	+0.5	+0.3	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.3	+0.3	+1.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.4	+0.3	+1.1	N.D.