Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3556.1 and Xcc-8004.3557.1 are separated by 107 nucleotidesXcc-8004.3557.1 and Xcc-8004.3558.1 are separated by 236 nucleotidesXcc-8004.3558.1 and Xcc-8004.3559.1 are separated by 2 nucleotidesXcc-8004.3559.1 and Xcc-8004.3560.1 overlap by 4 nucleotides Xcc-8004.3556.1: Xcc-8004.3556.1 - FIG01213161: hypothetical protein, at 3,446,846 to 3,447,511 Xcc-8004.3556.1 Xcc-8004.3557.1: Xcc-8004.3557.1 - Uridine monophosphate kinase (EC 2.7.4.22), at 3,447,619 to 3,448,341 Xcc-8004.3557.1 Xcc-8004.3558.1: Xcc-8004.3558.1 - Ribosome recycling factor, at 3,448,578 to 3,449,135 Xcc-8004.3558.1 Xcc-8004.3559.1: Xcc-8004.3559.1 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,449,138 to 3,449,914 Xcc-8004.3559.1 Xcc-8004.3560.1: Xcc-8004.3560.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,449,911 to 3,450,738 Xcc-8004.3560.1
Group Condition Xcc-8004.3556.1 Xcc-8004.3557.1 Xcc-8004.3558.1 Xcc-8004.3559.1 Xcc-8004.3560.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 N.D. N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.8 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.8 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes T0L1P4 -0.7 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.4 N.D. N.D. N.D. N.D.
moka MOKA -0.4 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes T0L1P3 -0.4 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. N.D. N.D. N.D.
clovis xylem sap Clovis xylem sap -0.4 N.D. N.D. N.D. N.D.
carbon source D-Fructose 16.67 mM (C) -0.4 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. N.D. N.D. N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino +0.4 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.4 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.6 N.D. N.D. N.D. N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.6 N.D. N.D. N.D. N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x +0.6 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.9 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.9 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +1.0 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +1.1 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.2 N.D. N.D. N.D. N.D.
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Xcc-8004.3556.1
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Xcc-8004.3557.1
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Xcc-8004.3559.1
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Xcc-8004.3560.1
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