Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3435.1 and Xcc-8004.3436.1 are separated by 2 nucleotidesXcc-8004.3436.1 and Xcc-8004.3437.1 are separated by 60 nucleotidesXcc-8004.3437.1 and Xcc-8004.3438.1 are separated by 224 nucleotidesXcc-8004.3438.1 and Xcc-8004.3442.1 are separated by 763 nucleotides Xcc-8004.3435.1: Xcc-8004.3435.1 - UPF0125 protein yfjF, at 3,326,848 to 3,327,144 Xcc-8004.3435.1 Xcc-8004.3436.1: Xcc-8004.3436.1 - hypothetical protein, at 3,327,147 to 3,327,578 Xcc-8004.3436.1 Xcc-8004.3437.1: Xcc-8004.3437.1 - tmRNA-binding protein SmpB, at 3,327,639 to 3,328,142 Xcc-8004.3437.1 Xcc-8004.3438.1: Xcc-8004.3438.1 - Serine peptidase, at 3,328,367 to 3,330,826 Xcc-8004.3438.1 Xcc-8004.3442.1: Xcc-8004.3442.1 - putative; ORF located using Glimmer/Genemark, at 3,331,590 to 3,331,829 Xcc-8004.3442.1
Group Condition Xcc-8004.3435.1 Xcc-8004.3436.1 Xcc-8004.3437.1 Xcc-8004.3438.1 Xcc-8004.3442.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. +0.1 -3.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.5 -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -1.0 -0.7
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. -0.1 -1.6
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -0.1 -1.5
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. N.D. -0.0 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.6 -0.7
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. -0.1 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.3 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.9 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.7 -0.4
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -0.2 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.0 -0.1
in planta xylem Xylemvessel barcodes T0L1P3 N.D. N.D. N.D. +0.3 -1.4
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. N.D. N.D. +0.1 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.5 -0.5
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. -0.1 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.6 -0.5
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.1 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.3 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.5 +1.0
in planta xylem Xylemvessel barcodes T0L2P4 N.D. N.D. N.D. -0.2 +0.9
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. N.D. +0.0 +0.9
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. +0.1 +0.9
carbon source D-Glucose 16.67 mM (C) N.D. N.D. N.D. +0.0 +1.1
carbon source Citric Acid 16.67 mM (C) N.D. N.D. N.D. -0.1 +1.2
carbon source Pectin from apple 2 g/L (C) N.D. N.D. N.D. +0.1 +1.2
carbon source D-Fructose 16.67 mM (C) N.D. N.D. N.D. +0.0 +1.3
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Xcc-8004.3435.1
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Xcc-8004.3436.1
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Xcc-8004.3438.1
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Xcc-8004.3442.1
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