Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3433.1 and Xcc-8004.3435.1 are separated by 222 nucleotidesXcc-8004.3435.1 and Xcc-8004.3436.1 are separated by 2 nucleotidesXcc-8004.3436.1 and Xcc-8004.3437.1 are separated by 60 nucleotidesXcc-8004.3437.1 and Xcc-8004.3438.1 are separated by 224 nucleotides Xcc-8004.3433.1: Xcc-8004.3433.1 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 3,326,230 to 3,326,625 Xcc-8004.3433.1 Xcc-8004.3435.1: Xcc-8004.3435.1 - UPF0125 protein yfjF, at 3,326,848 to 3,327,144 Xcc-8004.3435.1 Xcc-8004.3436.1: Xcc-8004.3436.1 - hypothetical protein, at 3,327,147 to 3,327,578 Xcc-8004.3436.1 Xcc-8004.3437.1: Xcc-8004.3437.1 - tmRNA-binding protein SmpB, at 3,327,639 to 3,328,142 Xcc-8004.3437.1 Xcc-8004.3438.1: Xcc-8004.3438.1 - Serine peptidase, at 3,328,367 to 3,330,826 Xcc-8004.3438.1
Group Condition Xcc-8004.3433.1 Xcc-8004.3435.1 Xcc-8004.3436.1 Xcc-8004.3437.1 Xcc-8004.3438.1
carbon source Citric Acid 10mM (C) -3.7 N.D. N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -3.1 N.D. N.D. N.D. -0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -2.7 N.D. N.D. N.D. -0.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -2.9 N.D. N.D. N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -2.7 N.D. N.D. N.D. -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -2.7 N.D. N.D. N.D. -0.0
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -2.7 N.D. N.D. N.D. +0.1
carbon source Pectin from apple 2 g/L (C) -2.7 N.D. N.D. N.D. +0.1
carbon source D-Glucose 16.67 mM (C) -2.6 N.D. N.D. N.D. +0.0
carbon source D-Fructose 16.67 mM (C) -2.5 N.D. N.D. N.D. +0.0
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -2.5 N.D. N.D. N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -2.4 N.D. N.D. N.D. +0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.2 N.D. N.D. N.D. -0.2
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.1 N.D. N.D. N.D. -0.2
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.3 N.D. N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.1 N.D. N.D. N.D. -0.0
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -2.0 N.D. N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -2.1 N.D. N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -2.0 N.D. N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -2.2 N.D. N.D. N.D. +0.1
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.0 N.D. N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -2.0 N.D. N.D. N.D. +0.1
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -2.0 N.D. N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.9 N.D. N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -1.8 N.D. N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -1.7 N.D. N.D. N.D. -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -1.6 N.D. N.D. N.D. -0.1
carbon source Citric Acid 16.67 mM (C) -1.7 N.D. N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. N.D. -0.7
moka MOKA -1.5 N.D. N.D. N.D. +0.1
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