Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3426.1 and Xcc-8004.3428.1 are separated by 138 nucleotidesXcc-8004.3428.1 and Xcc-8004.3429.1 are separated by 141 nucleotidesXcc-8004.3429.1 and Xcc-8004.3430.1 are separated by 100 nucleotidesXcc-8004.3430.1 and Xcc-8004.3431.1 are separated by 30 nucleotides Xcc-8004.3426.1: Xcc-8004.3426.1 - Chaperone protein DnaJ, at 3,318,270 to 3,319,400 Xcc-8004.3426.1 Xcc-8004.3428.1: Xcc-8004.3428.1 - Chaperone protein DnaK, at 3,319,539 to 3,321,467 Xcc-8004.3428.1 Xcc-8004.3429.1: Xcc-8004.3429.1 - Heat shock protein GrpE, at 3,321,609 to 3,322,127 Xcc-8004.3429.1 Xcc-8004.3430.1: Xcc-8004.3430.1 - Heat-inducible transcription repressor HrcA, at 3,322,228 to 3,323,280 Xcc-8004.3430.1 Xcc-8004.3431.1: Xcc-8004.3431.1 - DNA repair protein RecN, at 3,323,311 to 3,325,062 Xcc-8004.3431.1
Group Condition Xcc-8004.3426.1 Xcc-8004.3428.1 Xcc-8004.3429.1 Xcc-8004.3430.1 Xcc-8004.3431.1
in planta xylem Xylemvessel barcodes T0L1P3 -0.1 N.D. N.D. +0.5 -4.7
carbon source Citric Acid 16.67 mM (C) -1.1 N.D. N.D. +0.1 -3.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. +0.1 -2.6
r2a control R2A control -1.1 N.D. N.D. +0.1 -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.0 N.D. N.D. +0.0 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 N.D. N.D. -0.1 -0.8
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.6 N.D. N.D. -0.0 -1.6
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.3 N.D. N.D. -0.2 -1.6
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.2 N.D. N.D. -0.2 -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. -0.5 -0.7
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.7 N.D. N.D. -0.1 -1.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.5 N.D. N.D. -0.5 -0.9
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.6 N.D. N.D. -0.3 -1.0
control PBS control -0.7 N.D. N.D. -0.1 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 N.D. N.D. +0.5 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 N.D. N.D. +0.2 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 N.D. N.D. -0.1 +0.3
in planta xylem Xylemvessel barcodes T1L3P4 -0.4 N.D. N.D. +0.5 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 N.D. N.D. +0.6 -1.3
in planta xylem Xylemvessel barcodes T0L2P4 -0.5 N.D. N.D. +0.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 N.D. N.D. -0.2 +0.8
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.3 N.D. N.D. -0.8 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.4 N.D. N.D. +0.2 +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 N.D. N.D. +0.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 N.D. N.D. +0.4 +0.6
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.9 N.D. N.D. +0.2 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. +0.2 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. -0.1 +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 N.D. N.D. +0.3 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. N.D. -0.1 +1.4
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