Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3411.1 and Xcc-8004.3412.1 are separated by 105 nucleotidesXcc-8004.3412.1 and Xcc-8004.3413.1 are separated by 42 nucleotidesXcc-8004.3413.1 and Xcc-8004.3414.1 are separated by 146 nucleotidesXcc-8004.3414.1 and Xcc-8004.3415.1 are separated by 60 nucleotides Xcc-8004.3411.1: Xcc-8004.3411.1 - FIG01212231: hypothetical protein, at 3,299,689 to 3,300,600 Xcc-8004.3411.1 Xcc-8004.3412.1: Xcc-8004.3412.1 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 3,300,706 to 3,303,609 Xcc-8004.3412.1 Xcc-8004.3413.1: Xcc-8004.3413.1 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 3,303,652 to 3,304,866 Xcc-8004.3413.1 Xcc-8004.3414.1: Xcc-8004.3414.1 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 3,305,013 to 3,306,449 Xcc-8004.3414.1 Xcc-8004.3415.1: Xcc-8004.3415.1 - Lysine decarboxylase family, at 3,306,510 to 3,307,196 Xcc-8004.3415.1
Group Condition Xcc-8004.3411.1 Xcc-8004.3412.1 Xcc-8004.3413.1 Xcc-8004.3414.1 Xcc-8004.3415.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.0 N.D. N.D. N.D. -0.7
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.3 N.D. N.D. N.D. -0.4
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.1 N.D. N.D. N.D. -0.9
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.2 N.D. N.D. N.D. -0.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.2 N.D. N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.2 N.D. N.D. N.D. -0.4
carbon source Citric Acid 16.67 mM (C) -0.7 N.D. N.D. N.D. +0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.2 N.D. N.D. N.D. -0.4
carbon source Citric Acid 10mM (C) -0.6 N.D. N.D. N.D. +0.0
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.1 N.D. N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 N.D. N.D. N.D. -0.4
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.1 N.D. N.D. N.D. -0.4
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.2 N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 N.D. N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 N.D. N.D. N.D. +0.2
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.2 N.D. N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 N.D. N.D. N.D. +0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.2 N.D. N.D. N.D. +0.3
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.1 N.D. N.D. N.D. +0.3
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.1 N.D. N.D. N.D. +0.3
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino +0.1 N.D. N.D. N.D. +0.4
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.2 N.D. N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes T1L3P4 +0.2 N.D. N.D. N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. N.D. +0.5
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Xcc-8004.3411.1
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Xcc-8004.3412.1
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Xcc-8004.3414.1
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Xcc-8004.3415.1
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