Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.3309.1	Xcc-8004.3310.1	Xcc-8004.3312.1	Xcc-8004.3313.1	Xcc-8004.3314.1
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-2.1	+0.3	-2.7	N.D.
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	-2.8	-0.3	-0.8	N.D.
in planta xylem	Xylemvessel barcodes T0L1P4	N.D.	-2.4	+0.0	-1.1	N.D.
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	N.D.	-0.6	-0.1	-2.4	N.D.
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	-1.1	-0.2	-1.7	N.D.
in planta xylem	Xylemvessel barcodes T0L1P3	N.D.	-1.8	-0.3	-0.9	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.2	-0.1	-0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.1	-0.1	-0.6	N.D.
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	N.D.	-1.0	-0.1	-1.7	N.D.
carbon source	Citric Acid 10mM (C)	N.D.	-1.5	-0.1	-1.0	N.D.
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	N.D.	-1.2	-0.0	-1.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.7	-0.3	-0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-1.2	-0.0	-1.2	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	-0.9	-0.5	-1.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-1.6	-0.0	-0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-1.8	-0.2	-0.3	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	-2.4	+0.1	+0.1	N.D.
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	N.D.	-1.6	+0.1	-0.7	N.D.
carbon source	Pectin from apple 2 g/L (C)	N.D.	-1.0	+0.1	-1.2	N.D.
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	-2.2	+0.5	-0.4	N.D.
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	-1.8	+0.9	-1.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-1.9	+0.3	-0.3	N.D.
in planta xylem	Xylemvessel barcodes T1L3P4	N.D.	-1.8	+0.2	-0.4	N.D.
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-1.4	+0.1	-0.6	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-1.7	-0.3	+0.2	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-1.6	-0.3	+0.3	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-1.8	-0.1	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.6	+0.4	-0.2	N.D.
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	-1.1	+0.6	-0.6	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	-1.8	-0.1	+0.9	N.D.