Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3306.1 and Xcc-8004.3307.1 are separated by 48 nucleotidesXcc-8004.3307.1 and Xcc-8004.3309.1 are separated by 181 nucleotidesXcc-8004.3309.1 and Xcc-8004.3310.1 are separated by 56 nucleotidesXcc-8004.3310.1 and Xcc-8004.3312.1 are separated by 5 nucleotides Xcc-8004.3306.1: Xcc-8004.3306.1 - DNA ligase (EC 6.5.1.2), at 3,207,408 to 3,209,909 Xcc-8004.3306.1 Xcc-8004.3307.1: Xcc-8004.3307.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 3,209,958 to 3,211,220 Xcc-8004.3307.1 Xcc-8004.3309.1: Xcc-8004.3309.1 - Cell division protein ZipA, at 3,211,402 to 3,212,136 Xcc-8004.3309.1 Xcc-8004.3310.1: Xcc-8004.3310.1 - Chromosome partition protein smc, at 3,212,193 to 3,215,696 Xcc-8004.3310.1 Xcc-8004.3312.1: Xcc-8004.3312.1 - IroE protein, at 3,215,702 to 3,216,883 Xcc-8004.3312.1
Group Condition Xcc-8004.3306.1 Xcc-8004.3307.1 Xcc-8004.3309.1 Xcc-8004.3310.1 Xcc-8004.3312.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.0 N.D. -2.8 -0.3
in planta xylem Xylemvessel barcodes T0L1P4 N.D. -0.4 N.D. -2.4 +0.0
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. -0.1 N.D. -2.4 +0.1
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -0.1 N.D. -1.8 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 N.D. -2.2 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 N.D. -1.7 -0.3
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. -0.2 N.D. -1.8 -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.1 N.D. -1.6 -0.3
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.0 N.D. -1.8 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.1 N.D. -1.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.3 N.D. -1.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.3 N.D. -2.1 -0.1
carbon source D-Glucose 16.67 mM (C) N.D. +0.2 N.D. -1.9 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.2 N.D. -1.8 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 N.D. -1.9 +0.3
in planta xylem Xylemvessel barcodes T1L3P4 N.D. -0.2 N.D. -1.8 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 N.D. -1.7 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 N.D. -1.6 +0.0
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.1 N.D. -1.5 -0.3
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +0.0 N.D. -2.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.1 N.D. -1.8 -0.0
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.1 N.D. -2.1 +0.3
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. -0.1 N.D. -1.6 +0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.1 N.D. -1.6 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 N.D. -1.6 -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.1 N.D. -1.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 N.D. -1.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.1 N.D. -1.6 +0.4
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. +0.4 N.D. -1.8 +0.9
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.0 N.D. -1.1 +0.6
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