Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3218.1 and Xcc-8004.3219.1 are separated by 48 nucleotidesXcc-8004.3219.1 and Xcc-8004.3220.1 overlap by 187 nucleotidesXcc-8004.3220.1 and Xcc-8004.3221.1 are separated by 29 nucleotidesXcc-8004.3221.1 and Xcc-8004.3222.1 are separated by 14 nucleotides Xcc-8004.3218.1: Xcc-8004.3218.1 - Mobile element protein, at 3,131,237 to 3,131,389 Xcc-8004.3218.1 Xcc-8004.3219.1: Xcc-8004.3219.1 - Mobile element protein, at 3,131,438 to 3,131,701 Xcc-8004.3219.1 Xcc-8004.3220.1: Xcc-8004.3220.1 - Mobile element protein, at 3,131,515 to 3,132,516 Xcc-8004.3220.1 Xcc-8004.3221.1: Xcc-8004.3221.1 - Mobile element protein, at 3,132,546 to 3,132,713 Xcc-8004.3221.1 Xcc-8004.3222.1: Xcc-8004.3222.1 - Mobile element protein, at 3,132,728 to 3,132,913 Xcc-8004.3222.1
Group Condition Xcc-8004.3218.1 Xcc-8004.3219.1 Xcc-8004.3220.1 Xcc-8004.3221.1 Xcc-8004.3222.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -1.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. -1.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. N.D. -1.3
in planta xylem Xylemvessel barcodes T0L1P4 N.D. N.D. N.D. N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -1.0
carbon source D-Glucose 16.67 mM (C) N.D. N.D. N.D. N.D. -1.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -1.0
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.8
carbon source Pectin from apple 2 g/L (C) N.D. N.D. N.D. N.D. -0.8
carbon source D-Fructose 16.67 mM (C) N.D. N.D. N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.8
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +0.9
control PBS control N.D. N.D. N.D. N.D. +0.9
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. N.D. +0.9
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. +0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. N.D. N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +1.3
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. +1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +3.6
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