Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3205.1 and Xcc-8004.3206.1 are separated by 279 nucleotidesXcc-8004.3206.1 and Xcc-8004.3207.1 overlap by 13 nucleotidesXcc-8004.3207.1 and Xcc-8004.3208.1 overlap by 4 nucleotidesXcc-8004.3208.1 and Xcc-8004.3209.1 overlap by 4 nucleotides Xcc-8004.3205.1: Xcc-8004.3205.1 - motif=eukaryotic putative RNA-binding region RNP-1 signature, at 3,118,116 to 3,118,733 Xcc-8004.3205.1 Xcc-8004.3206.1: Xcc-8004.3206.1 - Acyl-CoA dehydrogenase/oxidase domain protein, at 3,119,013 to 3,120,008 Xcc-8004.3206.1 Xcc-8004.3207.1: Xcc-8004.3207.1 - LmbE-like protein, at 3,119,996 to 3,120,757 Xcc-8004.3207.1 Xcc-8004.3208.1: Xcc-8004.3208.1 - Methyltransferase type 12, at 3,120,754 to 3,121,350 Xcc-8004.3208.1 Xcc-8004.3209.1: Xcc-8004.3209.1 - hypothetical protein, at 3,121,347 to 3,122,024 Xcc-8004.3209.1
Group Condition Xcc-8004.3205.1 Xcc-8004.3206.1 Xcc-8004.3207.1 Xcc-8004.3208.1 Xcc-8004.3209.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -1.1 +0.6 N.D. -3.1 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.6 -0.2 N.D. -2.6 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.7 -0.4 N.D. -1.0 N.D.
control PBS control -0.2 -0.1 N.D. -1.6 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.3 -0.2 N.D. -1.0 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.1 -0.3 N.D. -1.1 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.5 +0.4 N.D. -1.1 N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.2 +0.5 N.D. -1.5 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.2 -0.4 N.D. -0.8 N.D.
control PBS control -0.3 +0.1 N.D. -0.9 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.1 -0.0 N.D. -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -0.8 N.D. -0.4 N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.2 +0.2 N.D. -1.0 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.1 +0.2 N.D. -1.0 N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.3 +0.3 N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.6 N.D. -1.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 -0.3 N.D. -1.0 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.2 +0.4 N.D. -0.6 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.0 -0.9 N.D. +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.3 N.D. +1.0 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.2 -0.3 N.D. +0.8 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 +0.1 -0.5 N.D. +1.1 N.D.
clovis xylem sap Clovis xylem sap -0.1 -0.1 N.D. +1.2 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.2 +0.2 N.D. +0.9 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.4 +0.0 N.D. +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.2 N.D. +1.1 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.2 -0.0 N.D. +1.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.3 N.D. +2.3 N.D.
carbon source Citric Acid 16.67 mM (C) +0.6 -0.2 N.D. +1.8 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.5 +0.3 N.D. +2.1 N.D.
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