Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3137.1 and Xcc-8004.3138.1 are separated by 95 nucleotidesXcc-8004.3138.1 and Xcc-8004.3139.1 are separated by 5 nucleotidesXcc-8004.3139.1 and Xcc-8004.3140.1 overlap by 4 nucleotidesXcc-8004.3140.1 and Xcc-8004.3141.1 are separated by 3 nucleotides Xcc-8004.3137.1: Xcc-8004.3137.1 - tRNA pseudouridine 13 synthase (EC 4.2.1.-), at 3,058,190 to 3,059,293 Xcc-8004.3137.1 Xcc-8004.3138.1: Xcc-8004.3138.1 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 3,059,389 to 3,059,880 Xcc-8004.3138.1 Xcc-8004.3139.1: Xcc-8004.3139.1 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,059,886 to 3,060,683 Xcc-8004.3139.1 Xcc-8004.3140.1: Xcc-8004.3140.1 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,060,680 to 3,061,045 Xcc-8004.3140.1 Xcc-8004.3141.1: Xcc-8004.3141.1 - Enolase (EC 4.2.1.11), at 3,061,049 to 3,062,341 Xcc-8004.3141.1
Group Condition Xcc-8004.3137.1 Xcc-8004.3138.1 Xcc-8004.3139.1 Xcc-8004.3140.1 Xcc-8004.3141.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -1.1 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 N.D. N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.6 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes T0L1P4 -0.6 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.5 N.D. N.D. N.D. N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.4 N.D. N.D. N.D. N.D.
clovis xylem sap Clovis xylem sap -0.3 N.D. N.D. N.D. N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.4 N.D. N.D. N.D. N.D.
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.4 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. N.D. N.D. N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x +0.4 N.D. N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days +0.4 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.5 N.D. N.D. N.D. N.D.
control PBS control +0.5 N.D. N.D. N.D. N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x +0.5 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.5 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.6 N.D. N.D. N.D. N.D.
carbon source Citric Acid 16.67 mM (C) +0.6 N.D. N.D. N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.7 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.8 N.D. N.D. N.D. N.D.
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