Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3120.1 and Xcc-8004.3121.1 are separated by 76 nucleotidesXcc-8004.3121.1 and Xcc-8004.3123.1 overlap by 1 nucleotidesXcc-8004.3123.1 and Xcc-8004.3124.1 are separated by 312 nucleotidesXcc-8004.3124.1 and Xcc-8004.3125.1 are separated by 61 nucleotides Xcc-8004.3120.1: Xcc-8004.3120.1 - RNA-binding protein Hfq, at 3,048,294 to 3,048,572 Xcc-8004.3120.1 Xcc-8004.3121.1: Xcc-8004.3121.1 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 3,048,649 to 3,049,632 Xcc-8004.3121.1 Xcc-8004.3123.1: Xcc-8004.3123.1 - Dihydropteroate synthase (EC 2.5.1.15), at 3,049,632 to 3,050,534 Xcc-8004.3123.1 Xcc-8004.3124.1: Xcc-8004.3124.1 - Cell division protein FtsH (EC 3.4.24.-), at 3,050,847 to 3,052,787 Xcc-8004.3124.1 Xcc-8004.3125.1: Xcc-8004.3125.1 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 3,052,849 to 3,053,481 Xcc-8004.3125.1
Group Condition Xcc-8004.3120.1 Xcc-8004.3121.1 Xcc-8004.3123.1 Xcc-8004.3124.1 Xcc-8004.3125.1
r2a control R2A control -3.4 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.6 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -1.7 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -1.3 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.3 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.3 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -1.3 N.D. N.D. N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.2 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 N.D. N.D. N.D. N.D.
control PBS control -1.2 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -1.1 N.D. N.D. N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.1 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes T1L3P4 -1.0 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 N.D. N.D. N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -1.0 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 N.D. N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes T0L2P4 -0.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 N.D. N.D. N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. N.D. N.D.
carbon source D-Glucose 16.67 mM (C) -0.7 N.D. N.D. N.D. N.D.
carbon source D-Fructose 16.67 mM (C) -0.7 N.D. N.D. N.D. N.D.
control PBS control +0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 N.D. N.D. N.D. N.D.
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