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Fitness for 5 genes in
Xanthomonas campestris pv. campestris strain 8004
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Xcc-8004.3046.1 and Xcc-8004.3047.1 are separated by 55 nucleotides
Xcc-8004.3047.1 and Xcc-8004.3048.1 overlap by 74 nucleotides
Xcc-8004.3048.1 and Xcc-8004.3049.1 are separated by 55 nucleotides
Xcc-8004.3049.1 and Xcc-8004.3050.1 overlap by 4 nucleotides
Xcc-8004.3046.1: Xcc-8004.3046.1 - Alkaline phosphatase (EC 3.1.3.1), at 2,979,721 to 2,981,676
Xcc-8004.3046.1
Xcc-8004.3047.1: Xcc-8004.3047.1 - FIG01210354: hypothetical protein, at 2,981,732 to 2,982,031
Xcc-8004.3047.1
Xcc-8004.3048.1: Xcc-8004.3048.1 - putative; ORF located using Glimmer/Genemark, at 2,981,958 to 2,982,320
Xcc-8004.3048.1
Xcc-8004.3049.1: Xcc-8004.3049.1 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 2,982,376 to 2,983,890
Xcc-8004.3049.1
Xcc-8004.3050.1: Xcc-8004.3050.1 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 2,983,887 to 2,984,267
Xcc-8004.3050.1
Group
Condition
Xcc-8004.3046.1
Xcc-8004.3047.1
Xcc-8004.3048.1
Xcc-8004.3049.1
Xcc-8004.3050.1
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
-0.0
-0.6
-0.3
-3.9
N.D.
in planta xylem
Xylemvessel barcodes Location 3 6 dpi (25 plantes)
+0.0
-0.2
-0.7
-3.3
N.D.
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
+0.0
-0.4
-0.3
-2.8
N.D.
in planta
1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
+0.0
-0.4
-0.5
-2.6
N.D.
in planta xylem
Xylemvessel barcodes Location 3 4 dpi (25 plantes)
+0.2
-0.2
-0.6
-2.8
N.D.
in planta xylem
Xylemvessel barcodes Location 3 6 dpi (25 plantes)
-0.0
-0.9
-0.0
-2.4
N.D.
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
+0.0
-0.3
-0.4
-2.6
N.D.
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
+0.0
-0.1
-0.3
-2.8
N.D.
in planta xylem
Xylemvessel barcodes Location 3 4 dpi (25 plantes)
+0.0
+0.2
-0.2
-3.1
N.D.
in planta
1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
+0.0
-0.1
-0.3
-2.7
N.D.
in planta xylem
Xylemvessel barcodes T1L3P4
-0.0
-0.1
-0.7
-1.9
N.D.
carbon source
D-Fructose 16.67 mM (C)
+0.0
+0.2
-0.3
-2.5
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.1
-0.3
-0.5
-1.8
N.D.
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
-0.0
+0.1
-0.2
-2.3
N.D.
clovis xylem sap
Clovis xylem sap
+0.0
-0.0
-0.2
-2.3
N.D.
carbon source
Pectin from apple 2 g/L (C)
-0.0
+0.4
-0.3
-2.5
N.D.
in planta
1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
-0.0
-0.1
+0.4
-2.8
N.D.
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
+0.0
+0.4
+0.0
-2.8
N.D.
clovis xylem sap
Clovis xylem sap
+0.1
-0.3
-0.0
-2.1
N.D.
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
-0.1
-0.0
-0.3
-2.0
N.D.
carbon source
D-Glucose 16.67 mM (C)
+0.0
-0.2
+0.0
-2.1
N.D.
in planta
1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
+0.1
+0.2
+0.7
-3.1
N.D.
clovis xylem sap
Clovis xylem sap
+0.2
+0.6
+0.2
-3.0
N.D.
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
+0.0
-0.1
+0.1
-2.3
N.D.
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
-0.1
-0.7
+0.9
-2.2
N.D.
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
+0.0
-0.3
+0.2
-1.9
N.D.
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
+0.1
+0.1
-0.3
-1.8
N.D.
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
+0.0
+0.3
-0.1
-2.1
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-0.1
+0.8
-0.2
-1.8
N.D.
carbon source
Citric Acid 16.67 mM (C)
+0.0
+0.3
-0.0
+2.8
N.D.
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