Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.3046.1 and Xcc-8004.3047.1 are separated by 55 nucleotidesXcc-8004.3047.1 and Xcc-8004.3048.1 overlap by 74 nucleotidesXcc-8004.3048.1 and Xcc-8004.3049.1 are separated by 55 nucleotidesXcc-8004.3049.1 and Xcc-8004.3050.1 overlap by 4 nucleotides Xcc-8004.3046.1: Xcc-8004.3046.1 - Alkaline phosphatase (EC 3.1.3.1), at 2,979,721 to 2,981,676 Xcc-8004.3046.1 Xcc-8004.3047.1: Xcc-8004.3047.1 - FIG01210354: hypothetical protein, at 2,981,732 to 2,982,031 Xcc-8004.3047.1 Xcc-8004.3048.1: Xcc-8004.3048.1 - putative; ORF located using Glimmer/Genemark, at 2,981,958 to 2,982,320 Xcc-8004.3048.1 Xcc-8004.3049.1: Xcc-8004.3049.1 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 2,982,376 to 2,983,890 Xcc-8004.3049.1 Xcc-8004.3050.1: Xcc-8004.3050.1 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 2,983,887 to 2,984,267 Xcc-8004.3050.1
Group Condition Xcc-8004.3046.1 Xcc-8004.3047.1 Xcc-8004.3048.1 Xcc-8004.3049.1 Xcc-8004.3050.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.0 -0.6 -0.3 -3.9 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.0 -0.2 -0.7 -3.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.0 -0.4 -0.3 -2.8 N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.0 -0.4 -0.5 -2.6 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.2 -0.2 -0.6 -2.8 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.0 -0.9 -0.0 -2.4 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.0 -0.3 -0.4 -2.6 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.0 -0.1 -0.3 -2.8 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.0 +0.2 -0.2 -3.1 N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) +0.0 -0.1 -0.3 -2.7 N.D.
in planta xylem Xylemvessel barcodes T1L3P4 -0.0 -0.1 -0.7 -1.9 N.D.
carbon source D-Fructose 16.67 mM (C) +0.0 +0.2 -0.3 -2.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.3 -0.5 -1.8 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -0.0 +0.1 -0.2 -2.3 N.D.
clovis xylem sap Clovis xylem sap +0.0 -0.0 -0.2 -2.3 N.D.
carbon source Pectin from apple 2 g/L (C) -0.0 +0.4 -0.3 -2.5 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.0 -0.1 +0.4 -2.8 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.0 +0.4 +0.0 -2.8 N.D.
clovis xylem sap Clovis xylem sap +0.1 -0.3 -0.0 -2.1 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.1 -0.0 -0.3 -2.0 N.D.
carbon source D-Glucose 16.67 mM (C) +0.0 -0.2 +0.0 -2.1 N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) +0.1 +0.2 +0.7 -3.1 N.D.
clovis xylem sap Clovis xylem sap +0.2 +0.6 +0.2 -3.0 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.0 -0.1 +0.1 -2.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.1 -0.7 +0.9 -2.2 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days +0.0 -0.3 +0.2 -1.9 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.1 +0.1 -0.3 -1.8 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days +0.0 +0.3 -0.1 -2.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.8 -0.2 -1.8 N.D.
carbon source Citric Acid 16.67 mM (C) +0.0 +0.3 -0.0 +2.8 N.D.
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