Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.2936.1 and Xcc-8004.2937.1 are separated by 667 nucleotidesXcc-8004.2937.1 and Xcc-8004.2938.1 are separated by 33 nucleotidesXcc-8004.2938.1 and Xcc-8004.2939.1 are separated by 2 nucleotidesXcc-8004.2939.1 and Xcc-8004.2940.1 are separated by 202 nucleotides Xcc-8004.2936.1: Xcc-8004.2936.1 - Amino acid transporters, at 2,858,731 to 2,860,161 Xcc-8004.2936.1 Xcc-8004.2937.1: Xcc-8004.2937.1 - Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109), at 2,860,829 to 2,861,482 Xcc-8004.2937.1 Xcc-8004.2938.1: Xcc-8004.2938.1 - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54), at 2,861,516 to 2,862,082 Xcc-8004.2938.1 Xcc-8004.2939.1: Xcc-8004.2939.1 - 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77), at 2,862,085 to 2,862,783 Xcc-8004.2939.1 Xcc-8004.2940.1: Xcc-8004.2940.1 - MORN repeat family protein, at 2,862,986 to 2,864,188 Xcc-8004.2940.1
Group Condition Xcc-8004.2936.1 Xcc-8004.2937.1 Xcc-8004.2938.1 Xcc-8004.2939.1 Xcc-8004.2940.1
carbon source Citric Acid 16.67 mM (C) -0.8 -4.0 N.D. N.D. +0.4
carbon source Citric Acid 10mM (C) +0.1 -3.5 N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.5 -2.0 N.D. N.D. -0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.7 -1.5 N.D. N.D. -0.0
carbon source D-Glucose 16.67 mM (C) +0.0 -1.7 N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.6 -1.2 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.4 -1.1 N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.5 -0.8 N.D. N.D. -0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.3 -0.8 N.D. N.D. -0.3
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -1.6 +0.2 N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.2 -1.2 N.D. N.D. +0.1
carbon source D-Fructose 16.67 mM (C) +0.0 -1.5 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 +0.1 N.D. N.D. -0.6
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.6 -0.5 N.D. N.D. -0.2
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -1.3 +0.2 N.D. N.D. -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.4 -0.4 N.D. N.D. -0.4
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.5 -0.5 N.D. N.D. -0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.7 -0.5 N.D. N.D. +0.1
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -1.1 +0.0 N.D. N.D. +0.0
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.6 -0.5 N.D. N.D. +0.1
carbon source Pectin from apple 2 g/L (C) +0.1 -1.0 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 +0.0 N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 +0.0 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 +0.1 N.D. N.D. -0.0
clovis xylem sap Clovis xylem sap -1.0 +0.0 N.D. N.D. +0.2
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.3 -0.8 N.D. N.D. +0.4
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.2 -0.7 N.D. N.D. +0.2
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -1.1 +0.3 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 +0.1 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 +0.0 N.D. N.D. +0.3
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Xcc-8004.2936.1
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Xcc-8004.2937.1
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Xcc-8004.2939.1
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Xcc-8004.2940.1
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