Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.287.1 and Xcc-8004.288.1 are separated by 126 nucleotidesXcc-8004.288.1 and Xcc-8004.289.1 are separated by 291 nucleotidesXcc-8004.289.1 and Xcc-8004.290.1 are separated by 96 nucleotidesXcc-8004.290.1 and Xcc-8004.291.1 are separated by 64 nucleotides Xcc-8004.287.1: Xcc-8004.287.1 - Haloalkane dehalogenase-like protein, at 274,298 to 275,200 Xcc-8004.287.1 Xcc-8004.288.1: Xcc-8004.288.1 - Ferredoxin, at 275,327 to 275,755 Xcc-8004.288.1 Xcc-8004.289.1: Xcc-8004.289.1 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 276,047 to 277,717 Xcc-8004.289.1 Xcc-8004.290.1: Xcc-8004.290.1 - NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster, at 277,814 to 278,824 Xcc-8004.290.1 Xcc-8004.291.1: Xcc-8004.291.1 - hypothetical protein, at 278,889 to 279,047 Xcc-8004.291.1
Group Condition Xcc-8004.287.1 Xcc-8004.288.1 Xcc-8004.289.1 Xcc-8004.290.1 Xcc-8004.291.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.4 -3.2 N.D. -0.8 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.6 -2.5 N.D. -1.2 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.5 -1.9 N.D. -1.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -2.8 N.D. -0.4 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.4 -3.3 N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 -1.2 N.D. -0.9 N.D.
in planta xylem Xylemvessel barcodes T0L1P4 -0.6 -1.9 N.D. -1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.8 N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 -1.8 N.D. -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.0 N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.7 N.D. -0.1 N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.1 -2.0 N.D. -1.0 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.6 -1.8 N.D. -0.5 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.8 -1.4 N.D. -0.7 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.3 -2.1 N.D. -0.4 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.4 -2.3 N.D. -0.6 N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.4 -0.6 N.D. -0.4 N.D.
r2a control R2A control -1.8 +0.5 N.D. -1.0 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.1 -1.1 N.D. -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -2.1 N.D. -0.5 N.D.
in planta xylem Xylemvessel barcodes T0L2P4 +0.3 -1.2 N.D. -1.1 N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino +0.2 -1.2 N.D. -0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 +1.2 N.D. -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 +1.5 N.D. -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 +1.3 N.D. -0.0 N.D.
carbon source Citric Acid 16.67 mM (C) +0.0 -0.9 N.D. +1.2 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 -0.9 +2.0 N.D. -0.6 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.1 +1.6 N.D. -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +2.1 N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +2.3 N.D. +0.1 N.D.
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