Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.247.1	Xcc-8004.248.1	Xcc-8004.249.1	Xcc-8004.251.1	Xcc-8004.252.1
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-1.2	-1.0	-1.8	-2.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	-1.3	-2.1	-1.1	-1.3
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	-2.4	-2.2	-1.2	-0.0
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	-1.5	-2.0	-0.6	-1.8
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-1.0	-1.5	-1.3	-1.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	-1.0	-1.5	-1.1	-1.1
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	N.D.	-1.2	-1.1	-1.1	-1.1
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	-1.5	-1.6	-0.6	-0.7
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	-1.5	-1.2	-1.1	-0.3
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-0.8	-1.2	-0.7	-0.6
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	-1.0	-1.1	-0.4	-0.5
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	-0.7	-1.1	-0.6	-0.6
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	-0.7	-1.0	-0.6	-0.5
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	-1.3	-0.8	-0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.3	-0.1	-1.2	-0.4
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	N.D.	-0.3	-0.9	-0.2	-0.5
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	-0.6	-0.6	-0.5	-0.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	N.D.	-0.4	-0.5	-0.1	-0.9
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	N.D.	-0.6	-0.5	-0.3	-0.4
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	-0.3	-0.9	-0.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.2	-0.2	-1.3	+0.1
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	N.D.	-0.2	-0.2	-0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	-0.4	-0.6	-0.4
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	N.D.	+0.0	+0.0	-0.3	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.8	+0.2	-0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.3	-0.1	-0.7	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.0	+0.3	-1.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.2	-0.1	-0.8	+0.3
carbon source	Citric Acid 10mM (C)	N.D.	+0.3	+0.3	+1.4	-2.1
carbon source	Citric Acid 16.67 mM (C)	N.D.	+0.4	+0.6	+3.8	-2.9