Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.2343.1 and Xcc-8004.2344.1 overlap by 4 nucleotidesXcc-8004.2344.1 and Xcc-8004.2345.1 overlap by 4 nucleotidesXcc-8004.2345.1 and Xcc-8004.2346.1 are separated by 76 nucleotidesXcc-8004.2346.1 and Xcc-8004.2347.1 overlap by 4 nucleotides Xcc-8004.2343.1: Xcc-8004.2343.1 - Cytochrome c-type biogenesis protein CcmE, heme chaperone, at 2,291,328 to 2,291,786 Xcc-8004.2343.1 Xcc-8004.2344.1: Xcc-8004.2344.1 - Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE, at 2,291,783 to 2,291,953 Xcc-8004.2344.1 Xcc-8004.2345.1: Xcc-8004.2345.1 - Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE, at 2,291,950 to 2,292,699 Xcc-8004.2345.1 Xcc-8004.2346.1: Xcc-8004.2346.1 - ABC transporter involved in cytochrome c biogenesis, CcmB subunit, at 2,292,776 to 2,293,471 Xcc-8004.2346.1 Xcc-8004.2347.1: Xcc-8004.2347.1 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 2,293,468 to 2,294,112 Xcc-8004.2347.1
Group Condition Xcc-8004.2343.1 Xcc-8004.2344.1 Xcc-8004.2345.1 Xcc-8004.2346.1 Xcc-8004.2347.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.1 N.D. N.D. -3.4 N.D.
in planta xylem Xylemvessel barcodes T0L1P4 -2.6 N.D. N.D. -2.7 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -1.6 N.D. N.D. -3.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.1 N.D. N.D. -2.8 N.D.
in planta xylem Xylemvessel barcodes T0L1P3 -2.4 N.D. N.D. -2.4 N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -1.3 N.D. N.D. -2.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. -3.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.7 N.D. N.D. -1.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.5 N.D. N.D. -1.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 N.D. N.D. -1.8 N.D.
in planta xylem Xylemvessel barcodes T0L2P4 -1.6 N.D. N.D. -1.6 N.D.
carbon source Citric Acid 16.67 mM (C) -1.8 N.D. N.D. -1.4 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -1.7 N.D. N.D. -1.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.8 N.D. N.D. -2.0 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.3 N.D. N.D. -1.5 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -2.7 N.D. N.D. -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.9 N.D. N.D. -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. -1.9 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.6 N.D. N.D. -1.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.1 N.D. N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.6 N.D. N.D. -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. N.D. -1.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 N.D. N.D. -0.9 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.8 N.D. N.D. -2.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. N.D. -2.1 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -1.6 N.D. N.D. +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.2 N.D. N.D. -1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.2 N.D. N.D. -1.3 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.3 N.D. N.D. +1.3 N.D.
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