Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.2303.1 and Xcc-8004.2304.1 overlap by 4 nucleotidesXcc-8004.2304.1 and Xcc-8004.2306.1 are separated by 213 nucleotidesXcc-8004.2306.1 and Xcc-8004.2307.1 are separated by 333 nucleotidesXcc-8004.2307.1 and Xcc-8004.2308.1 are separated by 57 nucleotides Xcc-8004.2303.1: Xcc-8004.2303.1 - Dihydroorotase (EC 3.5.2.3), at 2,254,559 to 2,255,908 Xcc-8004.2303.1 Xcc-8004.2304.1: Xcc-8004.2304.1 - Protein YidD, at 2,255,905 to 2,256,063 Xcc-8004.2304.1 Xcc-8004.2306.1: Xcc-8004.2306.1 - C4-type zinc finger protein, DksA/TraR family, at 2,256,277 to 2,256,537 Xcc-8004.2306.1 Xcc-8004.2307.1: Xcc-8004.2307.1 - C4-type zinc finger protein, DksA/TraR family, at 2,256,871 to 2,257,365 Xcc-8004.2307.1 Xcc-8004.2308.1: Xcc-8004.2308.1 - hypothetical protein, at 2,257,423 to 2,257,692 Xcc-8004.2308.1
Group Condition Xcc-8004.2303.1 Xcc-8004.2304.1 Xcc-8004.2306.1 Xcc-8004.2307.1 Xcc-8004.2308.1
carbon source Citric Acid 10mM (C) N.D. N.D. N.D. N.D. -0.9
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.5
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.5
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. N.D. -0.5
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. N.D. N.D. N.D. -0.5
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. N.D. -0.5
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. N.D. -0.5
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.4
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. N.D. -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. N.D. -0.3
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. N.D. N.D. N.D. -0.3
moka MOKA N.D. N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.3
clovis xylem sap Clovis xylem sap N.D. N.D. N.D. N.D. +0.3
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.3
control PBS control N.D. N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.3
r2a control R2A control N.D. N.D. N.D. N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.3
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.4
control PBS control N.D. N.D. N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.5
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