Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.2288.1 and Xcc-8004.2289.1 are separated by 28 nucleotidesXcc-8004.2289.1 and Xcc-8004.2290.1 are separated by 10 nucleotidesXcc-8004.2290.1 and Xcc-8004.2291.1 are separated by 28 nucleotidesXcc-8004.2291.1 and Xcc-8004.2292.1 are separated by 62 nucleotides Xcc-8004.2288.1: Xcc-8004.2288.1 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 2,239,451 to 2,240,800 Xcc-8004.2288.1 Xcc-8004.2289.1: Xcc-8004.2289.1 - hypothetical protein, at 2,240,829 to 2,241,548 Xcc-8004.2289.1 Xcc-8004.2290.1: Xcc-8004.2290.1 - Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase, at 2,241,559 to 2,242,326 Xcc-8004.2290.1 Xcc-8004.2291.1: Xcc-8004.2291.1 - Pro-zeta-carotene desaturase, prolycopene producing (EC 1.-.-.-), at 2,242,355 to 2,243,044 Xcc-8004.2291.1 Xcc-8004.2292.1: Xcc-8004.2292.1 - Polygalacturonase (EC 3.2.1.15), at 2,243,107 to 2,244,825 Xcc-8004.2292.1
Group Condition Xcc-8004.2288.1 Xcc-8004.2289.1 Xcc-8004.2290.1 Xcc-8004.2291.1 Xcc-8004.2292.1
carbon source Citric Acid 16.67 mM (C) -3.5 N.D. -0.9 N.D. -0.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -2.1 N.D. -1.6 N.D. +0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -1.1 N.D. -1.2 N.D. -0.0
carbon source Citric Acid 10mM (C) -2.3 N.D. +0.4 N.D. -0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -1.1 N.D. -1.3 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 N.D. -0.9 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.8 N.D. -0.8 N.D. -0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days -1.1 N.D. -0.2 N.D. -0.2
carbon source D-Fructose 16.67 mM (C) -1.2 N.D. -0.1 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -0.7 N.D. -0.8 N.D. +0.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.8 N.D. -0.4 N.D. -0.2
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.9 N.D. -0.3 N.D. -0.1
clovis xylem sap Clovis xylem sap -0.7 N.D. -0.8 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 N.D. -0.4 N.D. -0.4
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.5 N.D. -0.4 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.9 N.D. -0.7 N.D. +0.4
carbon source D-Glucose 16.67 mM (C) -0.8 N.D. -0.1 N.D. -0.2
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.6 N.D. -0.3 N.D. -0.2
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.9 N.D. -0.5 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 N.D. -1.0 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. -0.2 N.D. -0.6
in planta xylem Xylemvessel barcodes T0L1P3 -0.3 N.D. -0.3 N.D. -0.4
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.5 N.D. -0.5 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 N.D. -0.3 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. -0.4 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.7 N.D. -0.3 N.D. +0.0
clovis xylem sap Clovis xylem sap -0.5 N.D. -0.3 N.D. -0.1
clovis xylem sap Clovis xylem sap +0.2 N.D. -0.8 N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. -0.6 N.D. +0.0
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.7 N.D. -0.2 N.D. +0.1
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