Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.2136.1 and Xcc-8004.2137.1 overlap by 1 nucleotidesXcc-8004.2137.1 and Xcc-8004.2138.1 are separated by 146 nucleotidesXcc-8004.2138.1 and Xcc-8004.2139.1 are separated by 55 nucleotidesXcc-8004.2139.1 and Xcc-8004.2140.1 overlap by 130 nucleotides Xcc-8004.2136.1: Xcc-8004.2136.1 - Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster, at 2,050,570 to 2,052,906 Xcc-8004.2136.1 Xcc-8004.2137.1: Xcc-8004.2137.1 - Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster, at 2,052,906 to 2,054,537 Xcc-8004.2137.1 Xcc-8004.2138.1: Xcc-8004.2138.1 - FIG01211780: hypothetical protein, at 2,054,684 to 2,054,980 Xcc-8004.2138.1 Xcc-8004.2139.1: Xcc-8004.2139.1 - FIG01213750: hypothetical protein, at 2,055,036 to 2,056,262 Xcc-8004.2139.1 Xcc-8004.2140.1: Xcc-8004.2140.1 - hypothetical protein, at 2,056,133 to 2,056,558 Xcc-8004.2140.1
Group Condition Xcc-8004.2136.1 Xcc-8004.2137.1 Xcc-8004.2138.1 Xcc-8004.2139.1 Xcc-8004.2140.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.0 -0.6 N.D. -0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.3 N.D. -0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.4 N.D. -0.0 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.2 -0.1 N.D. -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.5 N.D. -0.4 N.D.
control PBS control -0.1 +0.0 N.D. -0.7 N.D.
in planta xylem Xylemvessel barcodes T1L3P4 -0.2 +0.1 N.D. -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.3 N.D. -0.3 N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.3 -0.1 N.D. -0.3 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.1 -0.0 N.D. -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.5 N.D. -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.3 -0.4 N.D. +0.0 N.D.
moka MOKA -0.1 -0.1 N.D. -0.4 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.3 +0.1 N.D. -0.4 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.2 +0.1 N.D. -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.4 N.D. +0.3 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.0 -0.5 N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.3 N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -0.3 N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.0 N.D. +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.3 N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.2 N.D. -0.1 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.4 +0.1 N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.1 N.D. +0.5 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.5 -0.1 N.D. -0.1 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.2 +0.4 N.D. +0.1 N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH -0.1 +0.4 N.D. +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.2 N.D. +0.4 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.1 +0.1 N.D. +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 +0.4 N.D. +0.4 N.D.
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