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Fitness for 5 genes in
Xanthomonas campestris pv. campestris strain 8004
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Xcc-8004.1966.1 and Xcc-8004.1967.1 overlap by 4 nucleotides
Xcc-8004.1967.1 and Xcc-8004.1968.1 are separated by 201 nucleotides
Xcc-8004.1968.1 and Xcc-8004.1969.1 overlap by 4 nucleotides
Xcc-8004.1969.1 and Xcc-8004.1970.1 are separated by 114 nucleotides
Xcc-8004.1966.1: Xcc-8004.1966.1 - putative; ORF located using Glimmer/Genemark, at 1,895,140 to 1,895,658
Xcc-8004.1966.1
Xcc-8004.1967.1: Xcc-8004.1967.1 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 1,895,655 to 1,896,473
Xcc-8004.1967.1
Xcc-8004.1968.1: Xcc-8004.1968.1 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 1,896,675 to 1,897,562
Xcc-8004.1968.1
Xcc-8004.1969.1: Xcc-8004.1969.1 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,897,559 to 1,898,908
Xcc-8004.1969.1
Xcc-8004.1970.1: Xcc-8004.1970.1 - Oxidoreductase, at 1,899,023 to 1,899,961
Xcc-8004.1970.1
Group
Condition
Xcc-8004.1966.1
Xcc-8004.1967.1
Xcc-8004.1968.1
Xcc-8004.1969.1
Xcc-8004.1970.1
in planta
1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
-1.5
-4.7
N.D.
N.D.
+0.1
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
-1.9
-3.7
N.D.
N.D.
-0.4
in planta xylem
Xylemvessel barcodes Location 3 6 dpi (25 plantes)
-0.8
-5.3
N.D.
N.D.
+0.3
in planta xylem
Xylemvessel barcodes Location 3 4 dpi (25 plantes)
-0.8
-4.2
N.D.
N.D.
-0.3
in planta
1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
-0.9
-4.0
N.D.
N.D.
-0.2
in planta
1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
-0.5
-4.4
N.D.
N.D.
-0.2
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
-0.9
-4.3
N.D.
N.D.
+0.1
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
-0.7
-4.3
N.D.
N.D.
+0.1
carbon source
D-Glucose 16.67 mM (C)
-0.2
-4.4
N.D.
N.D.
-0.1
carbon source
Citric Acid 16.67 mM (C)
-1.2
-3.9
N.D.
N.D.
+0.3
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
-1.1
-3.5
N.D.
N.D.
-0.2
in planta xylem
Xylemvessel barcodes Location 3 6 dpi (25 plantes)
-0.8
-3.7
N.D.
N.D.
-0.1
carbon source
D-Fructose 16.67 mM (C)
-0.4
-4.1
N.D.
N.D.
-0.1
in planta
1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
-0.5
-3.9
N.D.
N.D.
-0.1
in planta xylem
Xylemvessel barcodes Location 3 4 dpi (25 plantes)
-0.9
-3.6
N.D.
N.D.
+0.0
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
-0.9
-2.8
N.D.
N.D.
-0.3
carbon source
Citric Acid 10mM (C)
-0.4
-3.6
N.D.
N.D.
+0.4
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
-1.5
-1.9
N.D.
N.D.
-0.1
in planta xylem
Xylemvessel barcodes Location 2 6 dpi (25 plantes)
-0.5
-2.6
N.D.
N.D.
-0.3
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
-0.7
-2.6
N.D.
N.D.
-0.0
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
-0.6
-2.5
N.D.
N.D.
-0.0
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
-0.6
-2.3
N.D.
N.D.
-0.2
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
-1.0
-2.1
N.D.
N.D.
+0.1
carbon source
Pectin from apple 2 g/L (C)
-0.5
-2.4
N.D.
N.D.
-0.1
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
-0.2
-2.6
N.D.
N.D.
-0.1
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
-0.8
-1.8
N.D.
N.D.
-0.3
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
-1.0
-2.0
N.D.
N.D.
+0.1
in planta mesophyll
Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
-0.2
-2.2
N.D.
N.D.
-0.1
xantho_mme_glucose_dropout_lth
Xantho_MME_glucose_dropout_LTH
-0.4
-1.8
N.D.
N.D.
-0.0
in planta xylem
Xylemvessel barcodes Location 2 4 dpi (25 plantes)
-0.4
-1.6
N.D.
N.D.
+0.1
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